| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475473
Identifier: 113475473
GI number: 113475473
Start: 2751304
End: 2752452
Strand: Reverse
Name: 113475473
Synonym: Tery_1803
Alternate gene names: NA
Gene position: 2752452-2751304 (Counterclockwise)
Preceding gene: 113475474
Following gene: 113475472
Centisome position: 35.52
GC content: 30.81
Gene sequence:
>1149_bases ATGAAAATACCAAATAATGATTATTTTTATTTCCAAAAGTCATCAATAATTTTATTAATATTGGTGAATTTATTTATAGG AATAACTGGTTGTAATCAAGAAAATATTCCTGAAAAATCTATTTCTAATGAAGCGATAGAAAGTGATTTAACCTTAAATG ATGTTACTCTTGAAGAAGCGTCTGAAGCAGGTGAAATGTTGTGGCGGGTAAAATCTAAACGAGCTTCGTATGTAAAAAAT CAAGAATTAGTTAGAGTTACTAAACCAGAAGGTGAATTATTTCGAGATGGAAGGTTAGCATATAAAATTACTGCATTACA AGGAGAGGTATATCAAGATGGAGACAAAATTTTACTTATAGAAGAAATAGAAGTATATGATATCCAAAATAAAATAATTA TCAGAGGACAACAGTTAGAATGGTTAACTGAACCAGGAATAATTATTGTTCGCAACAATATAACAGGTAATAATGAACAG TTACAAGCATCAGCTCAAATGGCAAAAGTTATTAGTCTAGAAAAAAGAGTAGAGTTTTATGGTCAAGTGGTAGCTATGTT TAAAGAACCTGTGGTTAAAATAAAAACCGACCAGTTATTTTGGGAGGTAGATCAAAAAAAATTGATTGCTAATAAACCAA TAAAAATAGAAGAATTAAAAGATAAACAAGTTATTGGCATAGCTTATGGTGAAGAATCAGAGTTTAATTTAGAAAGTAAA ATAGCTACTATGAAGAAAAATGTACAGCTACTCCGAATTGACCCAAAAATACAAATAAGTAGTGATTTGATGATTTGGAA TATGCCACAAGATTTGATTGATTCACCAGGACCGATAAGGGTATTAGAACAAGGAGAAAAAGTAGTTTTACAAGCTAATA AAGGTCAAGGAAATTTTCAGAAAAATGTTTTTGTTTTATCAGGAGATGTGGTTGGTATTGGGCAAGAAAATCAAGCTCAA TTAAATAGCGATCGCCTAACTTGGTATTTGAATAATCAAACTTTTGAAGCAGAGGGTAATGTATTTTATCGTCAAGTGGA TCCACCATTTAATGTTAGGGGTCTTCGAGCAGTGGGGCAACTCAAAAATGACACAGTTATTATTCAAGGTGGTAATAGTA ATGTAGTGACAGAAATTATTCCTCAATAA
Upstream 100 bases:
>100_bases TTTTTTGTTCTCTATTCTACTACTGATATTCCCTAGTCTTTATTTTGGATGTATATAAAAAGTATCCTGAGTAAGATTAT CTAATTATAATAAGCTATTT
Downstream 100 bases:
>100_bases TGTATTTAAATTGTCTTATACTAAATATCAAAAGTATTGGTAAAGCTTAGAAAGTATGATTATTGAAAAGAAGATATTTT TACTTCCTTTAGAGAGTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MKIPNNDYFYFQKSSIILLILVNLFIGITGCNQENIPEKSISNEAIESDLTLNDVTLEEASEAGEMLWRVKSKRASYVKN QELVRVTKPEGELFRDGRLAYKITALQGEVYQDGDKILLIEEIEVYDIQNKIIIRGQQLEWLTEPGIIIVRNNITGNNEQ LQASAQMAKVISLEKRVEFYGQVVAMFKEPVVKIKTDQLFWEVDQKKLIANKPIKIEELKDKQVIGIAYGEESEFNLESK IATMKKNVQLLRIDPKIQISSDLMIWNMPQDLIDSPGPIRVLEQGEKVVLQANKGQGNFQKNVFVLSGDVVGIGQENQAQ LNSDRLTWYLNNQTFEAEGNVFYRQVDPPFNVRGLRAVGQLKNDTVIIQGGNSNVVTEIIPQ
Sequences:
>Translated_382_residues MKIPNNDYFYFQKSSIILLILVNLFIGITGCNQENIPEKSISNEAIESDLTLNDVTLEEASEAGEMLWRVKSKRASYVKN QELVRVTKPEGELFRDGRLAYKITALQGEVYQDGDKILLIEEIEVYDIQNKIIIRGQQLEWLTEPGIIIVRNNITGNNEQ LQASAQMAKVISLEKRVEFYGQVVAMFKEPVVKIKTDQLFWEVDQKKLIANKPIKIEELKDKQVIGIAYGEESEFNLESK IATMKKNVQLLRIDPKIQISSDLMIWNMPQDLIDSPGPIRVLEQGEKVVLQANKGQGNFQKNVFVLSGDVVGIGQENQAQ LNSDRLTWYLNNQTFEAEGNVFYRQVDPPFNVRGLRAVGQLKNDTVIIQGGNSNVVTEIIPQ >Mature_382_residues MKIPNNDYFYFQKSSIILLILVNLFIGITGCNQENIPEKSISNEAIESDLTLNDVTLEEASEAGEMLWRVKSKRASYVKN QELVRVTKPEGELFRDGRLAYKITALQGEVYQDGDKILLIEEIEVYDIQNKIIIRGQQLEWLTEPGIIIVRNNITGNNEQ LQASAQMAKVISLEKRVEFYGQVVAMFKEPVVKIKTDQLFWEVDQKKLIANKPIKIEELKDKQVIGIAYGEESEFNLESK IATMKKNVQLLRIDPKIQISSDLMIWNMPQDLIDSPGPIRVLEQGEKVVLQANKGQGNFQKNVFVLSGDVVGIGQENQAQ LNSDRLTWYLNNQTFEAEGNVFYRQVDPPFNVRGLRAVGQLKNDTVIIQGGNSNVVTEIIPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43359; Mature: 43359
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPNNDYFYFQKSSIILLILVNLFIGITGCNQENIPEKSISNEAIESDLTLNDVTLEEA CCCCCCCEEEEECCCEEEHHHHHHHHEEECCCCCCCCCHHCCCHHHHCCCEEEEEEHHHH SEAGEMLWRVKSKRASYVKNQELVRVTKPEGELFRDGRLAYKITALQGEVYQDGDKILLI HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEEEEEECCEEECCCEEEEE EEIEVYDIQNKIIIRGQQLEWLTEPGIIIVRNNITGNNEQLQASAQMAKVISLEKRVEFY EEEEEEEECCEEEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH GQVVAMFKEPVVKIKTDQLFWEVDQKKLIANKPIKIEELKDKQVIGIAYGEESEFNLESK HHHHHHHHCCCEEEEECCEEEEECCHHHHCCCCEEEEECCCCEEEEEEECCCCCCCHHHH IATMKKNVQLLRIDPKIQISSDLMIWNMPQDLIDSPGPIRVLEQGEKVVLQANKGQGNFQ HHHHHCCCEEEEECCCEEEECCEEEEECCHHHHCCCCCEEEEECCCEEEEEECCCCCCCC KNVFVLSGDVVGIGQENQAQLNSDRLTWYLNNQTFEAEGNVFYRQVDPPFNVRGLRAVGQ CEEEEEECCEEECCCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCHHHHHCC LKNDTVIIQGGNSNVVTEIIPQ CCCCEEEEECCCCCEEEEECCC >Mature Secondary Structure MKIPNNDYFYFQKSSIILLILVNLFIGITGCNQENIPEKSISNEAIESDLTLNDVTLEEA CCCCCCCEEEEECCCEEEHHHHHHHHEEECCCCCCCCCHHCCCHHHHCCCEEEEEEHHHH SEAGEMLWRVKSKRASYVKNQELVRVTKPEGELFRDGRLAYKITALQGEVYQDGDKILLI HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEEEEEECCEEECCCEEEEE EEIEVYDIQNKIIIRGQQLEWLTEPGIIIVRNNITGNNEQLQASAQMAKVISLEKRVEFY EEEEEEEECCEEEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH GQVVAMFKEPVVKIKTDQLFWEVDQKKLIANKPIKIEELKDKQVIGIAYGEESEFNLESK HHHHHHHHCCCEEEEECCEEEEECCHHHHCCCCEEEEECCCCEEEEEEECCCCCCCHHHH IATMKKNVQLLRIDPKIQISSDLMIWNMPQDLIDSPGPIRVLEQGEKVVLQANKGQGNFQ HHHHHCCCEEEEECCCEEEECCEEEEECCHHHHCCCCCEEEEECCCEEEEEECCCCCCCC KNVFVLSGDVVGIGQENQAQLNSDRLTWYLNNQTFEAEGNVFYRQVDPPFNVRGLRAVGQ CEEEEEECCEEECCCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCHHHHHCC LKNDTVIIQGGNSNVVTEIIPQ CCCCEEEEECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA