Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474501
Identifier: 113474501
GI number: 113474501
Start: 1060928
End: 1062169
Strand: Reverse
Name: 113474501
Synonym: Tery_0650
Alternate gene names: NA
Gene position: 1062169-1060928 (Counterclockwise)
Preceding gene: 113474502
Following gene: 113474496
Centisome position: 13.71
GC content: 39.13
Gene sequence:
>1242_bases ATGACTCTTAAGACTACTTACTCTTTTAACTCCCTAACCAACAACTCTACTACTGCTCTAGAAGTTAGTAATATCCAAGT TGAAGATCAAACTACAGCAAATAATTTACTCGCAATGGATGTTGAAACTTTAGCTGCTGTAGTCTTAAAAGAATTGCAAG GCGCTGCCAAAACTAAACCGGCAAAGGCTGAAACTGTTGCTTTACGTATAGCTAAAGAAGTAGAACGAGTTTGCTTTAAA AGTCATCGGATTCAAAATTCTGGTGAAGTTCGTTCTTGGCAACTTAGTTTAGCCCGTCATCGCTGGCAAAAGTGCTTACA ATATTACAAACTCGGTTCTAAACAAGGTCGAGTAGAATTACACTCTCTGTTAGCTTCTATAGTTTATCGTCATATTGCTT CTTTGGCAACACAGTTAAATTTCCAAGGTCGCTATAACCTAATTGAGGATTTTTTACAAGGGTTTTATATTGAGTCTCTA CGAGCTTTCCGCAGAGAACACGTTCTAGAGCAAGATTATACTCCTAAATTTAAGTTAGAATTGGCAGAGTATATGGCGTT TACTGAGCAGTATGCTAAACGTCAAATCGGTTTGCCTGGTAGAAATCGTCAGAGATTAATTGTGCTCAGAGCGCAGGGTT TTGCAAAAGGTCAACCTCCTGAAACTGCTCTTGATATTGAAATGGCGGTTGAGTCTCCCAAAGGTGAAGAGGCAGAAAGT TTTAGTCGTTCTTATGCAGTACAACAAGTTAGAGAACAAATGGTTTCTGAAACTGTTGACCCCGCTGAAGCTGTATTACG CGATCGCGTGGTTTCTGAATTGATTAATTACTTGAGCGCGGCTGGTCAAGAGCAATGTATTGATTATCTGCGCTTAAGAC TACAAGATTATCAAGCATCTGATATTGATCAAAAGTTGGGTATAACTTCTCGCCAACGGGATTATTTACAGCAGCGTTTT AAGTATCATGTGGAAAAGTTTGCTCGTTCTCAAAATTGGCAGCTAGTGCATCAGTGGTTAGGTGCTGATATCGACCAAAA ATTAGGTATGACTACTGAGCAATGGGATGCTTTCTTAGTTACACTTTCAACTGAGGAGCAGCAAATTTTACAACTTAAGC GAAAAGGTGAAGATGAAAAAGCGATTGCTACTGCTATCAAATGTACTCCTAAAAAGTTACAGAAGCATTGGGCTAAACTT TTGGAAATGGCTTGGGGCTTTCGCAATAGAAATAACAGCTAA
Upstream 100 bases:
>100_bases ATAAATGTAGAGGCAAGGAACAAATCACATAGATTTCAATCAATATCAAAAACTCTACTATTTTGTAAACTTAGGTTGCT TTTTCAAAAGATAAAATAAA
Downstream 100 bases:
>100_bases GACCAAGTTTAAATAAGGGGTGGGCATTTGTATTCTGAATGTTTGCGATCGCCTATCCTTTGAATTAATTGGCTATTTGC TCTCTTTTTTTTATCATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MTLKTTYSFNSLTNNSTTALEVSNIQVEDQTTANNLLAMDVETLAAVVLKELQGAAKTKPAKAETVALRIAKEVERVCFK SHRIQNSGEVRSWQLSLARHRWQKCLQYYKLGSKQGRVELHSLLASIVYRHIASLATQLNFQGRYNLIEDFLQGFYIESL RAFRREHVLEQDYTPKFKLELAEYMAFTEQYAKRQIGLPGRNRQRLIVLRAQGFAKGQPPETALDIEMAVESPKGEEAES FSRSYAVQQVREQMVSETVDPAEAVLRDRVVSELINYLSAAGQEQCIDYLRLRLQDYQASDIDQKLGITSRQRDYLQQRF KYHVEKFARSQNWQLVHQWLGADIDQKLGMTTEQWDAFLVTLSTEEQQILQLKRKGEDEKAIATAIKCTPKKLQKHWAKL LEMAWGFRNRNNS
Sequences:
>Translated_413_residues MTLKTTYSFNSLTNNSTTALEVSNIQVEDQTTANNLLAMDVETLAAVVLKELQGAAKTKPAKAETVALRIAKEVERVCFK SHRIQNSGEVRSWQLSLARHRWQKCLQYYKLGSKQGRVELHSLLASIVYRHIASLATQLNFQGRYNLIEDFLQGFYIESL RAFRREHVLEQDYTPKFKLELAEYMAFTEQYAKRQIGLPGRNRQRLIVLRAQGFAKGQPPETALDIEMAVESPKGEEAES FSRSYAVQQVREQMVSETVDPAEAVLRDRVVSELINYLSAAGQEQCIDYLRLRLQDYQASDIDQKLGITSRQRDYLQQRF KYHVEKFARSQNWQLVHQWLGADIDQKLGMTTEQWDAFLVTLSTEEQQILQLKRKGEDEKAIATAIKCTPKKLQKHWAKL LEMAWGFRNRNNS >Mature_412_residues TLKTTYSFNSLTNNSTTALEVSNIQVEDQTTANNLLAMDVETLAAVVLKELQGAAKTKPAKAETVALRIAKEVERVCFKS HRIQNSGEVRSWQLSLARHRWQKCLQYYKLGSKQGRVELHSLLASIVYRHIASLATQLNFQGRYNLIEDFLQGFYIESLR AFRREHVLEQDYTPKFKLELAEYMAFTEQYAKRQIGLPGRNRQRLIVLRAQGFAKGQPPETALDIEMAVESPKGEEAESF SRSYAVQQVREQMVSETVDPAEAVLRDRVVSELINYLSAAGQEQCIDYLRLRLQDYQASDIDQKLGITSRQRDYLQQRFK YHVEKFARSQNWQLVHQWLGADIDQKLGMTTEQWDAFLVTLSTEEQQILQLKRKGEDEKAIATAIKCTPKKLQKHWAKLL EMAWGFRNRNNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47660; Mature: 47529
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKTTYSFNSLTNNSTTALEVSNIQVEDQTTANNLLAMDVETLAAVVLKELQGAAKTKP CCEEEEECCCCCCCCCCEEEEEECEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC AKAETVALRIAKEVERVCFKSHRIQNSGEVRSWQLSLARHRWQKCLQYYKLGSKQGRVEL CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH HSLLASIVYRHIASLATQLNFQGRYNLIEDFLQGFYIESLRAFRREHVLEQDYTPKFKLE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LAEYMAFTEQYAKRQIGLPGRNRQRLIVLRAQGFAKGQPPETALDIEMAVESPKGEEAES HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEHEEEECCCCCCHHHH FSRSYAVQQVREQMVSETVDPAEAVLRDRVVSELINYLSAAGQEQCIDYLRLRLQDYQAS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC DIDQKLGITSRQRDYLQQRFKYHVEKFARSQNWQLVHQWLGADIDQKLGMTTEQWDAFLV CHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCHHCCCEEEE TLSTEEQQILQLKRKGEDEKAIATAIKCTPKKLQKHWAKLLEMAWGFRNRNNS EECCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TLKTTYSFNSLTNNSTTALEVSNIQVEDQTTANNLLAMDVETLAAVVLKELQGAAKTKP CEEEEECCCCCCCCCCEEEEEECEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC AKAETVALRIAKEVERVCFKSHRIQNSGEVRSWQLSLARHRWQKCLQYYKLGSKQGRVEL CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH HSLLASIVYRHIASLATQLNFQGRYNLIEDFLQGFYIESLRAFRREHVLEQDYTPKFKLE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LAEYMAFTEQYAKRQIGLPGRNRQRLIVLRAQGFAKGQPPETALDIEMAVESPKGEEAES HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEHEEEECCCCCCHHHH FSRSYAVQQVREQMVSETVDPAEAVLRDRVVSELINYLSAAGQEQCIDYLRLRLQDYQAS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC DIDQKLGITSRQRDYLQQRFKYHVEKFARSQNWQLVHQWLGADIDQKLGMTTEQWDAFLV CHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCHHCCCEEEE TLSTEEQQILQLKRKGEDEKAIATAIKCTPKKLQKHWAKLLEMAWGFRNRNNS EECCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA