Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474496
Identifier: 113474496
GI number: 113474496
Start: 1049819
End: 1051168
Strand: Reverse
Name: 113474496
Synonym: Tery_0643
Alternate gene names: NA
Gene position: 1051168-1049819 (Counterclockwise)
Preceding gene: 113474501
Following gene: 113474494
Centisome position: 13.56
GC content: 32.3
Gene sequence:
>1350_bases ATGACTCCAAATCCTGCAATAATGACAGCTGTGGAGAATCTGGACTACCGTGTTACTTTAGGGGATGTAGCAGCTCAAGC TGGATTAGATATTAAAGTCGCAGAACAAGCATTATTAGCTTTAGCTACAGATGCTGGTGGTCATTTACAAGTATCAGAAT CAGGAGAAATTGCTTATTTATTTCCCAATAATTTTAGAAGTATTTTACGCAATAAATTCTGGCGCTTAAGATTGAGAGAA TGGTGGGAAAAAGTTTGGCGAATATTGTTTTATTTAATTAGAGTTTCTTTCGGATTTTTATTGATACTTTCTATAATAAT TATAATGGTTGCTATTGCCATCATTGTTATTTCAATTAACTCTAGTAGTGAACAAAATGACTCATGTGAAGGGGAAAATA ATTCGGGCGCTAGTATGGGATTTTTTCCGCGGTTTGGATTTAATCCTTATTGGTTGTGGTTGTTTGATTGGGGATACTAC GATCAACCCTATAGATATCAACGTAAAAATCAAAGAAAAACAAATAAATCTTTTATTCCAAAAAAAGAAAATGAAATGAA TTTTTTGGAGGCTATATTTTCTTTTCTCTTTGGAGACGGGAACCCTAATTACAATTTAGATGAGCAACGTTGGCAGGCGA TCGCTACTGTAATTAAAAATAATCAAGGTGCAGTAGTTGCCGAACAAATTGCTCCTTATTTAGATGATTTAGGGAAAGAA TATGCTGTAGAATATGAAGAGTATATTTTACCAGTATTAATTCGTTTTAATGGTCGACCAGAAGTTAGTCCTGATGGTCA AATTGTTTATCATTTTCCTGATTTACAAACAACAGCAAAACAATGGCATTTTGAACCTGTTTCTACTTATTTAATAGAAA AAAAATTGCGTTTTAGTAAAGCCAATTCTAATCAAATTATGTTGGCAATTGGATTAGGTGCTGTTAATTTTATTGGTGCT TTAGTTTTAGGTTCATTGTTAGAAGATGATAGAATGATAGAGCAGATTGGGTGGATTATTAATTTTGTTGAAGTTATTTA TCCTGTGCTACTAGCTTATGGTATTAGTTTTCTAGTATTACCATTCATTCGTTATTTTTGGGTACAATGGCGTAATGGTA AAGTTGAGAAAAGAAATCAACAAAGAAAAAACAGAACTATTGCTTTAAACCAAGCTAGTAATCTGTTAATTCGGAAAATT GATTATGCTAGAGAATTTGCAAAAGAAACAATTATTAGTAATCAAGATTTGGCCTATACAACGGAAAAGAATATCCTAGA ACAGGAAGCTGAACAGACAGATAAAATTGATGCTGAATGGCAAAAAAGATTGAATCAATCAGATGTTTAA
Upstream 100 bases:
>100_bases TACAATTGATCATATTGTAGACAATATCCAGATGAATATTGGATACTTTGACATATTTACTTATAATTTAAAATAGGTCA ATTAAGTTTGAGGTAATGTT
Downstream 100 bases:
>100_bases AATATTAGTAAAAGTTGTGAAGCATTCATAATTTACATTGTAATTTTCGGGCGTTTAAATATGAGGTAATTATTATCAGA TTTTGAGTTATGACTAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MTPNPAIMTAVENLDYRVTLGDVAAQAGLDIKVAEQALLALATDAGGHLQVSESGEIAYLFPNNFRSILRNKFWRLRLRE WWEKVWRILFYLIRVSFGFLLILSIIIIMVAIAIIVISINSSSEQNDSCEGENNSGASMGFFPRFGFNPYWLWLFDWGYY DQPYRYQRKNQRKTNKSFIPKKENEMNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKE YAVEYEEYILPVLIRFNGRPEVSPDGQIVYHFPDLQTTAKQWHFEPVSTYLIEKKLRFSKANSNQIMLAIGLGAVNFIGA LVLGSLLEDDRMIEQIGWIINFVEVIYPVLLAYGISFLVLPFIRYFWVQWRNGKVEKRNQQRKNRTIALNQASNLLIRKI DYAREFAKETIISNQDLAYTTEKNILEQEAEQTDKIDAEWQKRLNQSDV
Sequences:
>Translated_449_residues MTPNPAIMTAVENLDYRVTLGDVAAQAGLDIKVAEQALLALATDAGGHLQVSESGEIAYLFPNNFRSILRNKFWRLRLRE WWEKVWRILFYLIRVSFGFLLILSIIIIMVAIAIIVISINSSSEQNDSCEGENNSGASMGFFPRFGFNPYWLWLFDWGYY DQPYRYQRKNQRKTNKSFIPKKENEMNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKE YAVEYEEYILPVLIRFNGRPEVSPDGQIVYHFPDLQTTAKQWHFEPVSTYLIEKKLRFSKANSNQIMLAIGLGAVNFIGA LVLGSLLEDDRMIEQIGWIINFVEVIYPVLLAYGISFLVLPFIRYFWVQWRNGKVEKRNQQRKNRTIALNQASNLLIRKI DYAREFAKETIISNQDLAYTTEKNILEQEAEQTDKIDAEWQKRLNQSDV >Mature_448_residues TPNPAIMTAVENLDYRVTLGDVAAQAGLDIKVAEQALLALATDAGGHLQVSESGEIAYLFPNNFRSILRNKFWRLRLREW WEKVWRILFYLIRVSFGFLLILSIIIIMVAIAIIVISINSSSEQNDSCEGENNSGASMGFFPRFGFNPYWLWLFDWGYYD QPYRYQRKNQRKTNKSFIPKKENEMNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKEY AVEYEEYILPVLIRFNGRPEVSPDGQIVYHFPDLQTTAKQWHFEPVSTYLIEKKLRFSKANSNQIMLAIGLGAVNFIGAL VLGSLLEDDRMIEQIGWIINFVEVIYPVLLAYGISFLVLPFIRYFWVQWRNGKVEKRNQQRKNRTIALNQASNLLIRKID YAREFAKETIISNQDLAYTTEKNILEQEAEQTDKIDAEWQKRLNQSDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52042; Mature: 51911
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPNPAIMTAVENLDYRVTLGDVAAQAGLDIKVAEQALLALATDAGGHLQVSESGEIAYL CCCCCHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEE FPNNFRSILRNKFWRLRLREWWEKVWRILFYLIRVSFGFLLILSIIIIMVAIAIIVISIN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC SSSEQNDSCEGENNSGASMGFFPRFGFNPYWLWLFDWGYYDQPYRYQRKNQRKTNKSFIP CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCC KKENEMNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKE CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH YAVEYEEYILPVLIRFNGRPEVSPDGQIVYHFPDLQTTAKQWHFEPVSTYLIEKKLRFSK HHHHHHHHHEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHC ANSNQIMLAIGLGAVNFIGALVLGSLLEDDRMIEQIGWIINFVEVIYPVLLAYGISFLVL CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PFIRYFWVQWRNGKVEKRNQQRKNRTIALNQASNLLIRKIDYAREFAKETIISNQDLAYT HHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE TEKNILEQEAEQTDKIDAEWQKRLNQSDV HHHHHHHHHHHHHHCCCHHHHHHCCCCCC >Mature Secondary Structure TPNPAIMTAVENLDYRVTLGDVAAQAGLDIKVAEQALLALATDAGGHLQVSESGEIAYL CCCCHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEE FPNNFRSILRNKFWRLRLREWWEKVWRILFYLIRVSFGFLLILSIIIIMVAIAIIVISIN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC SSSEQNDSCEGENNSGASMGFFPRFGFNPYWLWLFDWGYYDQPYRYQRKNQRKTNKSFIP CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCC KKENEMNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKE CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH YAVEYEEYILPVLIRFNGRPEVSPDGQIVYHFPDLQTTAKQWHFEPVSTYLIEKKLRFSK HHHHHHHHHEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHC ANSNQIMLAIGLGAVNFIGALVLGSLLEDDRMIEQIGWIINFVEVIYPVLLAYGISFLVL CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PFIRYFWVQWRNGKVEKRNQQRKNRTIALNQASNLLIRKIDYAREFAKETIISNQDLAYT HHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE TEKNILEQEAEQTDKIDAEWQKRLNQSDV HHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA