| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474436
Identifier: 113474436
GI number: 113474436
Start: 930908
End: 931135
Strand: Direct
Name: 113474436
Synonym: Tery_0579
Alternate gene names: NA
Gene position: 930908-931135 (Clockwise)
Preceding gene: 113474435
Following gene: 113474438
Centisome position: 12.01
GC content: 40.79
Gene sequence:
>228_bases ATGCCACATACAATTGTTACTAATATTTGCGAAGGTGTTGCTGACTGTGCTAATGCCTGTCCAGTTGCTTGTATCCATTC AGGGCCAGGTAAAAATAATAAGGGAACTGATTGGTATTGGGTTGATTTTGATTCCTGTATTGACTGCGGAATTTGTTTGG AAGTTTGTCCTGTAGAAAAAGCAGTACTTGCTGAGGAAAGACCTGAATTACAGCAGACTCCAGAGTAG
Upstream 100 bases:
>100_bases TTAATAATTAAAGCCTTGTTTAAGTATAGTATTATTTTTTTCATCCTTTGGTATAATATAATTTTTGAATTAATAAGTTT AAACTTTTAAATAAACTAAA
Downstream 100 bases:
>100_bases CTCTTAGATGGGAAGAATTTAATTAAAAAATAGGGATAAACTTAGTGCTAGTTTGCGATCGCTATTTGATATTATAACAA CCATTATCCTATAATAAATT
Product: 4Fe-4S ferredoxin, iron-sulfur binding
Products: NA
Alternate protein names: Ferredoxin-Like Protein; Ferredoxin 4Fe-4S; Ferredoxin Like Protein; NADHUbiquinone Oxidoreductase Chain I-Like Protein
Number of amino acids: Translated: 75; Mature: 74
Protein sequence:
>75_residues MPHTIVTNICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEKAVLAEERPELQQTPE
Sequences:
>Translated_75_residues MPHTIVTNICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEKAVLAEERPELQQTPE >Mature_74_residues PHTIVTNICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEKAVLAEERPELQQTPE
Specific function: Unknown
COG id: COG1146
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8136; Mature: 8005
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
10.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 12.0 %Cys+Met (Translated Protein) 10.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 10.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHTIVTNICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEK CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECHHHHCCCCCEECCCCCH AVLAEERPELQQTPE HHHHHCCCCCCCCCC >Mature Secondary Structure PHTIVTNICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEK CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECHHHHCCCCCEECCCCCH AVLAEERPELQQTPE HHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA