Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474402

Identifier: 113474402

GI number: 113474402

Start: 852585

End: 853763

Strand: Reverse

Name: 113474402

Synonym: Tery_0538

Alternate gene names: NA

Gene position: 853763-852585 (Counterclockwise)

Preceding gene: 113474404

Following gene: 113474401

Centisome position: 11.02

GC content: 36.56

Gene sequence:

>1179_bases
ATGGAGCGTAGCATCTCAAAGTCTTTATTCTTCCTACAAAGATTGGAACCAAAAATTTCAGTCATGGATCGCTACATCAT
CGCAGAATTAATTGGGCCATTCCTCTTTGGTGTAGGATTATTTTCATCTCTTGGCATAACAGTTGGGGCCATGTTTGAGT
TAGTCCGAAAAGTAACAGAATCTGGACTACCTATTTCCATTGCCATTCAAGTGTTTCTCCTAAAAATGCCAGAATTTATT
GGTTTGGCATTCCCCATGGCAATGATACTTACTACCCTCATGGTTTACAGTCAGATGTCCGGCCATAGCGAGATAGTTGC
CCTCCGTAGCTGTGGCATTAGTATCTATCGAATGATTATACCTACAATCATATTAAGTCTGACAGTAACTACTTTGAGCT
TTGCCCTAAATGAAATAATTGTACCCAGTGCCAACTATCAAGCATCTCTCATTTTAGAAAAAACCCTAGAGCAAGAAAAT
CCTCCTTTCAAAGAAGAAAATATTTTCTATCCAGAATTTGGTAAAGTCAAGCAACCAGACGGTAGTCAAGACGATACACT
GACCCGTTTATTCTATGCCGAAAAATTTGATGGTAAATATATGCAAGGGGTAACTATCCTAGACCGTTCCCAATATGGAG
TTGATCAAATAGTGTCCTCTGAGTCAGCAACTTGGAATTCAGCAGAAAATATTTGGGACTTATTTAATGGGACAATTTAT
CTTGTATCTCCAGATGGCTCATATCGTAATATTGTAAAATTTGACCATAAAAAATTAAAGCTTTCTACTGCCCCTTTAGA
TTTAGCCGGTAAAAGACGTACTTACAAACAAATGAATATTTCTCAATCTTATGAATATTTAGAATTAATGCGACTAAGTG
GGAATTATAGGAAAGTTGTTAAAACCCAAGTCAGAATTCAACAAAAATTGGCTTTACCATTTGTATGTTTAGTAATGGGT
TTAGTAGGAGCAGCTTTAGGAATTAGACCGCAAAGAAAGGCTAATCGAGGTACTAGCTTTGGTATTAGTGTGATAATTAT
TTTTGCCTATTATTTACTTTCATTTATTACAGGAGCAATGGGGCAAAAAGAAATTTTAACTCCTTTTTTGGCTGGATGGT
TACCAAATTTTCTAGGTCTTGGAGTAGCAGTATTCTTATTGGCAAGGGTCTCACGTTAA

Upstream 100 bases:

>100_bases
TGAAATAATATCCTAAACATCTGTTTCATCAGGACAGAATTAAAAGCCTTATTTGCTTTTAATTTCTTTATTGTAGAGTT
GACCTTAAACCTGAAATAAT

Downstream 100 bases:

>100_bases
TCAAGTGAGAAGTTATTTTTATAATGGTAATATTGAGCAATTATCTAAAAAAAATTAGCCTGATTATTTTGATAATTCAA
GAGTTTTATTATTTCAGGGT

Product: permease YjgP/YjgQ

Products: NA

Alternate protein names: Permease; Permease YjgP/YjgQ; Permease YjgP/YjgQ Family; YjgP/YjgQ Family Protein; YjgP/YjgQ Family Permease; Permease Yjgp/Yjgq Family Protein; Unclassified ABC-Type Transport System Permease; Permease Family Protein; YjgP/YjgQ Permease Superfamily; YjgP/YjgQ Permease; YjgP/YjgQ Family Membrane Protein

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI
GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN
PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY
LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG
LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR

Sequences:

>Translated_392_residues
MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI
GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN
PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY
LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG
LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR
>Mature_392_residues
MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI
GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN
PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY
LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG
LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR

Specific function: Unknown

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43954; Mature: 43954

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTE
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLPISIAIQVFLLKMPEFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
PTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPD
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY
CCCCHHHHHHHHHHHCCCCHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEE
LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVV
EECCCCCCCHHHHHCCHHEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCHHHHH
KTQVRIQQKLALPFVCLVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
GQKEILTPFLAGWLPNFLGLGVAVFLLARVSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTE
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLPISIAIQVFLLKMPEFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
PTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPD
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY
CCCCHHHHHHHHHHHCCCCHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEE
LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVV
EECCCCCCCHHHHHCCHHEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCHHHHH
KTQVRIQQKLALPFVCLVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
GQKEILTPFLAGWLPNFLGLGVAVFLLARVSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA