| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is pgl [H]
Identifier: 113474399
GI number: 113474399
Start: 847091
End: 847798
Strand: Reverse
Name: pgl [H]
Synonym: Tery_0535
Alternate gene names: 113474399
Gene position: 847798-847091 (Counterclockwise)
Preceding gene: 113474401
Following gene: 113474398
Centisome position: 10.94
GC content: 40.25
Gene sequence:
>708_bases ATGGAAAAACAAGTTAAGTTACTAGAAGATAAAGAACAGTTGATCAAACAAGCTTTGGACATTTGCTTGGCGAAAATTCA AGAGGCGATCAGAGAACGTAATCAATGTACAATAGCTTTAGCTGGTGGAAATACTCCAAGGCCACTTTATGAGTTCATAA AAAATCAAAATATAGATTGGGATAAAATTCATGTATTTTGGGGCGACGAACGTTATGTAGCTCCTGACCATCCGGATAGT AATCAAAAAATGGCCAGAGAAGCTTGGCTAGATCAAGTAACCATACCAGCAACAAATGTTCATCCTATGGAAACAGGGTC GGGAGACCCGGAAGCTGATGCTTTAAAGCATGATGCTCATTTGCGAGATTTTTTTCAAGTCTCTACAGGGGAGTTTCCGA GCTTTGATTTGATTTTACTAGGAATGGGAGGTGATGGTCATACAGCCTCCTTGTTTCCCCATACAAACGCTTTGAAAGTA AGCGATCGCCTAATTACTGTAGGAAATAAAGATGGCCAACCGCGATTAACTTTCACGGTTCCATTAATCAATCAAGCACG TTGCGTAATCTTTCTAGTTGCTGGTGCAGACAAACAAGCCGCGTTAGACGAAGTATTTGCAGAAAAAGGTGATGATATGA ATTATCCCAGTCGCCTGATCCAACCTAAAGGAGAGCTACAATGGTTATTAACGGGTGTTAATATTTGA
Upstream 100 bases:
>100_bases TCGAATCTCAATCAAAACCGCTACCGTATGGCCGTGATACCCAAATTTAGAAAAAATACTATTTTTTGGGGTGTAAACTT TTAATCTTAACACAAATCAA
Downstream 100 bases:
>100_bases GAATTGACATTCTCCAGTAGCTGTTAGGCCTGGGGGAGTTCTACTGAGCTGAGGCCTAGCTGTGTGAGTTAACATTTGGC ACTTAGCATTAGCTCACTCA
Product: 6-phosphogluconolactonase
Products: NA
Alternate protein names: 6PGL [H]
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MEKQVKLLEDKEQLIKQALDICLAKIQEAIRERNQCTIALAGGNTPRPLYEFIKNQNIDWDKIHVFWGDERYVAPDHPDS NQKMAREAWLDQVTIPATNVHPMETGSGDPEADALKHDAHLRDFFQVSTGEFPSFDLILLGMGGDGHTASLFPHTNALKV SDRLITVGNKDGQPRLTFTVPLINQARCVIFLVAGADKQAALDEVFAEKGDDMNYPSRLIQPKGELQWLLTGVNI
Sequences:
>Translated_235_residues MEKQVKLLEDKEQLIKQALDICLAKIQEAIRERNQCTIALAGGNTPRPLYEFIKNQNIDWDKIHVFWGDERYVAPDHPDS NQKMAREAWLDQVTIPATNVHPMETGSGDPEADALKHDAHLRDFFQVSTGEFPSFDLILLGMGGDGHTASLFPHTNALKV SDRLITVGNKDGQPRLTFTVPLINQARCVIFLVAGADKQAALDEVFAEKGDDMNYPSRLIQPKGELQWLLTGVNI >Mature_235_residues MEKQVKLLEDKEQLIKQALDICLAKIQEAIRERNQCTIALAGGNTPRPLYEFIKNQNIDWDKIHVFWGDERYVAPDHPDS NQKMAREAWLDQVTIPATNVHPMETGSGDPEADALKHDAHLRDFFQVSTGEFPSFDLILLGMGGDGHTASLFPHTNALKV SDRLITVGNKDGQPRLTFTVPLINQARCVIFLVAGADKQAALDEVFAEKGDDMNYPSRLIQPKGELQWLLTGVNI
Specific function: Hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate [H]
COG id: COG0363
COG function: function code G; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily [H]
Homologues:
Organism=Homo sapiens, GI52145310, Length=225, Percent_Identity=30.6666666666667, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI6912586, Length=233, Percent_Identity=30.0429184549356, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI115533060, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533058, Length=231, Percent_Identity=25.974025974026, Blast_Score=71, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6321957, Length=232, Percent_Identity=28.8793103448276, Blast_Score=93, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6321687, Length=232, Percent_Identity=29.7413793103448, Blast_Score=83, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6324362, Length=207, Percent_Identity=29.951690821256, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6319918, Length=207, Percent_Identity=29.4685990338164, Blast_Score=72, Evalue=9e-14, Organism=Drosophila melanogaster, GI24641119, Length=233, Percent_Identity=33.0472103004292, Blast_Score=111, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005900 - InterPro: IPR006148 [H]
Pfam domain/function: PF01182 Glucosamine_iso [H]
EC number: =3.1.1.31 [H]
Molecular weight: Translated: 26286; Mature: 26286
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKQVKLLEDKEQLIKQALDICLAKIQEAIRERNQCTIALAGGNTPRPLYEFIKNQNIDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCC DKIHVFWGDERYVAPDHPDSNQKMAREAWLDQVTIPATNVHPMETGSGDPEADALKHDAH EEEEEEECCCEEECCCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHH LRDFFQVSTGEFPSFDLILLGMGGDGHTASLFPHTNALKVSDRLITVGNKDGQPRLTFTV HHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEECCEEEEECCCCCCCEEEEEE PLINQARCVIFLVAGADKQAALDEVFAEKGDDMNYPSRLIQPKGELQWLLTGVNI CCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCC >Mature Secondary Structure MEKQVKLLEDKEQLIKQALDICLAKIQEAIRERNQCTIALAGGNTPRPLYEFIKNQNIDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCC DKIHVFWGDERYVAPDHPDSNQKMAREAWLDQVTIPATNVHPMETGSGDPEADALKHDAH EEEEEEECCCEEECCCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHH LRDFFQVSTGEFPSFDLILLGMGGDGHTASLFPHTNALKVSDRLITVGNKDGQPRLTFTV HHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEECCEEEEECCCCCCCEEEEEE PLINQARCVIFLVAGADKQAALDEVFAEKGDDMNYPSRLIQPKGELQWLLTGVNI CCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231; 9298645 [H]