| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474388
Identifier: 113474388
GI number: 113474388
Start: 829610
End: 830479
Strand: Direct
Name: 113474388
Synonym: Tery_0524
Alternate gene names: NA
Gene position: 829610-830479 (Clockwise)
Preceding gene: 113474385
Following gene: 113474389
Centisome position: 10.7
GC content: 36.32
Gene sequence:
>870_bases ATGGTCAAAACCAAAAACACCCTTTTGTCTCATACTGATTTAGTAAAATCCTATTTGGACATTGAAGTACTAGGGCAAGT TATGACAAAAAATTCTGACTCACAAGATGAGTATCTAGCTAAAATTAGGAATGTTTGTAATGGGAGTGCTGAAGATTTAG AACTATATGAGGCGATCGCTAACTTTTGTCGGCAAACCAATGATAGAAAGCGCCGTCTAGCATTTGTTCCTTTATTTAAG AAAATTGAAAAATTAAGAGGACTAAAAAAAGTTAGCAATTCTAGCGAGTATTATCATGACTACCAAGATATATTGCAGGA GACTTGGGAAGAGTTTTACAAAAAGTTTCCCGCTGAGTTTGAACCTGCAGGCCAATCTTTAAAAGGAAGTTTGGTAACTT GGATTAACGAAAAACTGCGTTTGAGATACAAGGTAATAGACTTATATCCCAAGTCTAGAGATGACAATAAAGGAAATAAA CCCTTAACCCCAAAACAGAGATTTAACCAAATAATCAGAAGTAAACCAAAATCTCTGGATGCTCCTAATAGTACCAATGA TTTTGATAATGATTTGACCATTGGCGATTTCTTAGAGAGTGAGGACCCTGGACCTCTGGAGGAGGCTATTGGGGAAGAGC AAAAACAAAACATTAATATGTTCTTGGAAATAGTCAAGGATAGTAAATATCATATGCGCAGCTGTCCCGAATGTACTTTT CAGGCTGTTGCTCAACGTCTTTTTTTTGAGGAACCTTCGAAAAATTTGAAGCAAGTTGCATTGGAGTTCGGAGTTAATTA TAGTAGTTTACGGACTTTTTGGCTACGGACTTGTAAGAAAATTTCTCAGGAACTATCCCCAGAACTATAA
Upstream 100 bases:
>100_bases CAAAATACTTGCAACAACAAGGAAAAAACTCTGAGAGAAGAATATGGGCTTTAGGTTTTCTCTGAAAACTAAACAAAGTA GGAAGGGGCGATAAGTAAAT
Downstream 100 bases:
>100_bases CAAAATTTACAAGAATTAATTCAGGAGAAATAACTATGCAAACAGAAACTTTTGGGCTAAAAATACCTATTACTGAAGAT GCTCGCCGATACGCTGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MVKTKNTLLSHTDLVKSYLDIEVLGQVMTKNSDSQDEYLAKIRNVCNGSAEDLELYEAIANFCRQTNDRKRRLAFVPLFK KIEKLRGLKKVSNSSEYYHDYQDILQETWEEFYKKFPAEFEPAGQSLKGSLVTWINEKLRLRYKVIDLYPKSRDDNKGNK PLTPKQRFNQIIRSKPKSLDAPNSTNDFDNDLTIGDFLESEDPGPLEEAIGEEQKQNINMFLEIVKDSKYHMRSCPECTF QAVAQRLFFEEPSKNLKQVALEFGVNYSSLRTFWLRTCKKISQELSPEL
Sequences:
>Translated_289_residues MVKTKNTLLSHTDLVKSYLDIEVLGQVMTKNSDSQDEYLAKIRNVCNGSAEDLELYEAIANFCRQTNDRKRRLAFVPLFK KIEKLRGLKKVSNSSEYYHDYQDILQETWEEFYKKFPAEFEPAGQSLKGSLVTWINEKLRLRYKVIDLYPKSRDDNKGNK PLTPKQRFNQIIRSKPKSLDAPNSTNDFDNDLTIGDFLESEDPGPLEEAIGEEQKQNINMFLEIVKDSKYHMRSCPECTF QAVAQRLFFEEPSKNLKQVALEFGVNYSSLRTFWLRTCKKISQELSPEL >Mature_289_residues MVKTKNTLLSHTDLVKSYLDIEVLGQVMTKNSDSQDEYLAKIRNVCNGSAEDLELYEAIANFCRQTNDRKRRLAFVPLFK KIEKLRGLKKVSNSSEYYHDYQDILQETWEEFYKKFPAEFEPAGQSLKGSLVTWINEKLRLRYKVIDLYPKSRDDNKGNK PLTPKQRFNQIIRSKPKSLDAPNSTNDFDNDLTIGDFLESEDPGPLEEAIGEEQKQNINMFLEIVKDSKYHMRSCPECTF QAVAQRLFFEEPSKNLKQVALEFGVNYSSLRTFWLRTCKKISQELSPEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33665; Mature: 33665
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKTKNTLLSHTDLVKSYLDIEVLGQVMTKNSDSQDEYLAKIRNVCNGSAEDLELYEAIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH NFCRQTNDRKRRLAFVPLFKKIEKLRGLKKVSNSSEYYHDYQDILQETWEEFYKKFPAEF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EPAGQSLKGSLVTWINEKLRLRYKVIDLYPKSRDDNKGNKPLTPKQRFNQIIRSKPKSLD CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC APNSTNDFDNDLTIGDFLESEDPGPLEEAIGEEQKQNINMFLEIVKDSKYHMRSCPECTF CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCHHHHHCCCHHHH QAVAQRLFFEEPSKNLKQVALEFGVNYSSLRTFWLRTCKKISQELSPEL HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVKTKNTLLSHTDLVKSYLDIEVLGQVMTKNSDSQDEYLAKIRNVCNGSAEDLELYEAIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH NFCRQTNDRKRRLAFVPLFKKIEKLRGLKKVSNSSEYYHDYQDILQETWEEFYKKFPAEF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EPAGQSLKGSLVTWINEKLRLRYKVIDLYPKSRDDNKGNKPLTPKQRFNQIIRSKPKSLD CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC APNSTNDFDNDLTIGDFLESEDPGPLEEAIGEEQKQNINMFLEIVKDSKYHMRSCPECTF CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCHHHHHCCCHHHH QAVAQRLFFEEPSKNLKQVALEFGVNYSSLRTFWLRTCKKISQELSPEL HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA