Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474373

Identifier: 113474373

GI number: 113474373

Start: 808988

End: 809668

Strand: Direct

Name: 113474373

Synonym: Tery_0506

Alternate gene names: NA

Gene position: 808988-809668 (Clockwise)

Preceding gene: 113474372

Following gene: 113474374

Centisome position: 10.44

GC content: 38.18

Gene sequence:

>681_bases
ATGGATATTCAATTAATACATCAACCCGATAATACGATCGCTAAAGTTAGCTTAAATAGAGGAGAAGAAATCGTTGCCCA
AGCAGGTTGTATGGTTGCTATGAGTGGGTTTATCAATACTAGTACTACCCTCAGACAAGGAAAAGGAGGGGGAATTATGG
GGGGTATAAAACGAATGTTAGGGGGTGAATCTCTATTTTTAAGTGTTTTTCGTTCCCCTAGTCCCGACGGCCAAGTTTTT
CTCGCCCCTAAATTAATGGGAGACATCCTAGTTTATGAAATGAAGGGTCAAGAATTAGTTGTCCAAGCATCCTCCTATCT
TGCTTCTGATAACAATGTAGATCTTGATTTAGGGTTTCAAGGGATAAAATCTTTATTCTCAGGAGAATCTATTTTTTGGT
TAAGTATTACCGGTTATGGCCCAGTAATTTTAACTTCTTTTGGAGGAATTTATGAAATAGATGTTAAGGGTGATTATATT
GTGGATACTGGCCATATTGTCGCTTTTGAAAGCAGTTTAGATTTTCGTATTGATAAAGCTAATTCAAGTTGGTTGGGGGC
ATTTTTTGGCGGTGAAGGTTTTGTCTGTCGTTTCCAAGGCCGAGGCAAAGTTTATTGTCAAACCCATAATTCAGGGAGTT
TTGGATCTCTCATCGGTTCTCAATTGCCTCCTAAAAAATAA

Upstream 100 bases:

>100_bases
TCGACTCAAAGGCAATGGTGTTATTTATTTGCAATCTCGTAGTATTGAGGGTTTAGTTCAATTCTTAAAACCCAAAGTCC
GTTAAAAAGTTCAAAAAATT

Downstream 100 bases:

>100_bases
ATCATTTTTTGAAAATGACTAGGCTCAAAGGAAGGAGAGAGGGAGGTCGTTTCAGTTATAACCTAATCAGTTATCAGTAC
CTCAATAGAATATTTTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF
LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI
VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK

Sequences:

>Translated_226_residues
MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF
LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI
VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK
>Mature_226_residues
MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF
LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI
VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK

Specific function: Unknown

COG id: COG2013

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002838
- InterPro:   IPR016031 [H]

Pfam domain/function: PF01987 DUF124 [H]

EC number: NA

Molecular weight: Translated: 24286; Mature: 24286

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRML
CCEEEEECCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHH
GGESLFLSVFRSPSPDGQVFLAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQ
CCCEEEEEEECCCCCCCCEEECHHHCCCEEEEEECCCEEEEEEHHHCCCCCCEEEEECHH
GIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYIVDTGHIVAFESSLDFRIDKA
HHHHHHCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCEEEEEECCCCEEEECC
NSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK
CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRML
CCEEEEECCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHH
GGESLFLSVFRSPSPDGQVFLAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQ
CCCEEEEEEECCCCCCCCEEECHHHCCCEEEEEECCCEEEEEEHHHCCCCCCEEEEECHH
GIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYIVDTGHIVAFESSLDFRIDKA
HHHHHHCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCEEEEEECCCCEEEECC
NSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK
CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA