| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is mutL [H]
Identifier: 113474371
GI number: 113474371
Start: 806353
End: 808116
Strand: Reverse
Name: mutL [H]
Synonym: Tery_0504
Alternate gene names: 113474371
Gene position: 808116-806353 (Counterclockwise)
Preceding gene: 113474377
Following gene: 113474370
Centisome position: 10.43
GC content: 35.43
Gene sequence:
>1764_bases ATGCAATCTCAAATTCAAACCTTACCTAAAGAAGTTGTCAGCTTAATTGCTGCTGGAGAAGTTATTGATTCTTTAGCAGC AGTTGTGCGGGAATTAGTAGAAAACTCTCTTGATGCTGGAGCCACTCGCATCATAGTTTCTATCATTTCTGAACAGTGGC GAGTACAAATTTCTGACAATGGAATGGGTATGAATTTAGCCAATTTAAAACGAGCAGCAAATCCTCATAGCACCAGTAAG ATTACTAATCTTCAAGACCTCACAAAAATTAGTAGTTTAGGATTTCGTGGAGAAGCACTTCATAGTTTAGCTAATCTCTC AAATTTAGAAATATTAAGTCGTCCTAAGTCACCCCTTTCAGAAAATGAAAATGAAGGTTGGCGAGTTGTTTATGATCAGC AAGGAAAATCTGTTAAAGCTGAAAGAGTTGCCATTGCTCCTGGTACTATTGTTAAGGTTTCTCATATTTTTGGTAAATGG CCTGTACGTCGAAAAGGAATGCCTTCTCCCCCACAACAAATGCGAGGTATACAATTAATTATTCAGCAAATAGCCCTTTG CTATCCTGATGTTACTTGGCAAATTTGGCAGGGTAGTAAATTATGGATACAAATTAGTCCTGGGGCTACGGCAAAACAAA TTTTACCTCAAATTTTATCTACAGTAAGATTGAATGATTTACAGTATATTCAACAAGAAATTGATGAGCAAGAAGCAGAA GAATTAAATATTCAAACATCGAGTTTTTCCCAATCTCAAGATTCTCAACTTTTGGATAGACAATCATTAGAATTAGTGTT AGGTTTGCCAGATAGATGTCATCGTAGACGACCTGATTGGGTAAAAGTTGGTATTAATGGTAGGGTAGTAAAAGTGCCAG AATTAGAACAAACAATTATTCGTTCTTTAGCGCGGACTTGTCCTGGCGATCGCTATCCTCTATGTTTCATTCATTTACAA ATTTTTCCCTATCAAATTAACTGGAACCGTCATCCGGCAAAAACAGAAATTTATCTAGATAATTTGAAATTTTGGCAACA ACAAATCAATTTAGTAATTGGTAAAGCATTACAATTTAGTTCGGATATTATGCCAGAATTTCCTTTGTCAGAAAGAGTGG AAAAACTCTTAAAAGTCTCAGAAAATACTGGGAATTATCAAGTTAGTCGAGCTATAGAAGTTTCTCCAGATAATACAGAA CAAAAAAAATCAAAATTAGGACTAATAGAATTAAAAGCGATCGCTCAATTACACAATACTTATATAGTAGCAGAACATCC AAGTGGCATTTGGTTGATTGAACAACATATTGCCCACGAAAGAATTTTATATGAAGAATTATGTGATGCTTGGGAAATAA TTTTTTTAGAAACTCCGATTATTTTACATCATTTATCCCCAGCTCAAATAGAACAACTTCAACGCTTAAATATAGACATA GAAACCTTCGGAGATTTACTTTGGGCTGCTCGTAGTGCTCCCAAAATGTTAGCAAAAAGAAATGACTGTGCTGATGCTTT AATTGAACTTAGTAAAGGTGGCGATCTAGAATCTGCTAAAGTAGCCACTGCTTGTCGTAGTGCTATTAGAAATGGAACTC CTTTAAGCCTACCGGAAATGCAAAGTTTATTAAATAAATGGCAACTTACCCATAACCCTCGTACTTGTCCCCACGGTAGA CCAATTTATTTACCTTTAGAAGAATCAGCTTTATCTCGTTTCTTTCGTCGAAATTGGGTGATTGGAAAAAGTCATGGTAT TTAA
Upstream 100 bases:
>100_bases ATTAGTCTAATTAAGATCCTGAAAATACATAGGTTAAAAAACAAAATTACCTCCTGTTATTAACTATAGTTAGAAACTTT TTGTTACTGCTTTTATATAA
Downstream 100 bases:
>100_bases AATAAAAGACAAAAAGCAAAAATAAATAAATTTAAGATTTTGCACCAATTATCAAAATGAAAAAACCTTAACTATTGACT GATTACCTGATACGAAAATA
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MQSQIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIISEQWRVQISDNGMGMNLANLKRAANPHSTSK ITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLSENENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKW PVRRKGMPSPPQQMRGIQLIIQQIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAE ELNIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTIIRSLARTCPGDRYPLCFIHLQ IFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQFSSDIMPEFPLSERVEKLLKVSENTGNYQVSRAIEVSPDNTE QKKSKLGLIELKAIAQLHNTYIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIFLETPIILHHLSPAQIEQLQRLNIDI ETFGDLLWAARSAPKMLAKRNDCADALIELSKGGDLESAKVATACRSAIRNGTPLSLPEMQSLLNKWQLTHNPRTCPHGR PIYLPLEESALSRFFRRNWVIGKSHGI
Sequences:
>Translated_587_residues MQSQIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIISEQWRVQISDNGMGMNLANLKRAANPHSTSK ITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLSENENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKW PVRRKGMPSPPQQMRGIQLIIQQIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAE ELNIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTIIRSLARTCPGDRYPLCFIHLQ IFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQFSSDIMPEFPLSERVEKLLKVSENTGNYQVSRAIEVSPDNTE QKKSKLGLIELKAIAQLHNTYIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIFLETPIILHHLSPAQIEQLQRLNIDI ETFGDLLWAARSAPKMLAKRNDCADALIELSKGGDLESAKVATACRSAIRNGTPLSLPEMQSLLNKWQLTHNPRTCPHGR PIYLPLEESALSRFFRRNWVIGKSHGI >Mature_587_residues MQSQIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIISEQWRVQISDNGMGMNLANLKRAANPHSTSK ITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLSENENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKW PVRRKGMPSPPQQMRGIQLIIQQIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAE ELNIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTIIRSLARTCPGDRYPLCFIHLQ IFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQFSSDIMPEFPLSERVEKLLKVSENTGNYQVSRAIEVSPDNTE QKKSKLGLIELKAIAQLHNTYIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIFLETPIILHHLSPAQIEQLQRLNIDI ETFGDLLWAARSAPKMLAKRNDCADALIELSKGGDLESAKVATACRSAIRNGTPLSLPEMQSLLNKWQLTHNPRTCPHGR PIYLPLEESALSRFFRRNWVIGKSHGI
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4505911, Length=344, Percent_Identity=25.5813953488372, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI189458898, Length=344, Percent_Identity=25.5813953488372, Blast_Score=109, Evalue=7e-24, Organism=Homo sapiens, GI4557757, Length=338, Percent_Identity=25.7396449704142, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310128478, Length=162, Percent_Identity=38.2716049382716, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI4505913, Length=162, Percent_Identity=38.2716049382716, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI91992162, Length=195, Percent_Identity=33.8461538461538, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI91992160, Length=195, Percent_Identity=33.8461538461538, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI189458896, Length=191, Percent_Identity=29.3193717277487, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI310128480, Length=111, Percent_Identity=36.9369369369369, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1790612, Length=337, Percent_Identity=31.7507418397626, Blast_Score=139, Evalue=3e-34, Organism=Caenorhabditis elegans, GI17562796, Length=350, Percent_Identity=26.5714285714286, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71991825, Length=348, Percent_Identity=25.8620689655172, Blast_Score=112, Evalue=7e-25, Organism=Saccharomyces cerevisiae, GI6323819, Length=341, Percent_Identity=25.8064516129032, Blast_Score=110, Evalue=6e-25, Organism=Saccharomyces cerevisiae, GI6324247, Length=355, Percent_Identity=26.7605633802817, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6325093, Length=248, Percent_Identity=29.4354838709677, Blast_Score=97, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6323063, Length=164, Percent_Identity=28.6585365853659, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17136968, Length=350, Percent_Identity=26.5714285714286, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI17136970, Length=168, Percent_Identity=38.6904761904762, Blast_Score=111, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 66398; Mature: 66398
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSQIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIISEQWRVQISDN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCC GMGMNLANLKRAANPHSTSKITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLS CCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCCCC ENENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKWPVRRKGMPSPPQQMRGIQLI CCCCCCEEEEECCCCCCEECCEEEECCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHH IQQIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAE HHHHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH ELNIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTII HCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHCCCCCEEEECCCCEEEECCCHHHHHH RSLARTCPGDRYPLCFIHLQIFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQFS HHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHC SDIMPEFPLSERVEKLLKVSENTGNYQVSRAIEVSPDNTEQKKSKLGLIELKAIAQLHNT CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCC YIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIFLETPIILHHLSPAQIEQLQRLNIDI EEEEECCCCEEEEHHHHHHHHHHHHHHHCHHEEEEEECCHHEECCCHHHHHHHHHCCCCH ETFGDLLWAARSAPKMLAKRNDCADALIELSKGGDLESAKVATACRSAIRNGTPLSLPEM HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH QSLLNKWQLTHNPRTCPHGRPIYLPLEESALSRFFRRNWVIGKSHGI HHHHHHHEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MQSQIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIISEQWRVQISDN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCC GMGMNLANLKRAANPHSTSKITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLS CCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCCCC ENENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKWPVRRKGMPSPPQQMRGIQLI CCCCCCEEEEECCCCCCEECCEEEECCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHH IQQIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAE HHHHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH ELNIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTII HCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHCCCCCEEEECCCCEEEECCCHHHHHH RSLARTCPGDRYPLCFIHLQIFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQFS HHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHC SDIMPEFPLSERVEKLLKVSENTGNYQVSRAIEVSPDNTEQKKSKLGLIELKAIAQLHNT CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCC YIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIFLETPIILHHLSPAQIEQLQRLNIDI EEEEECCCCEEEEHHHHHHHHHHHHHHHCHHEEEEEECCHHEECCCHHHHHHHHHCCCCH ETFGDLLWAARSAPKMLAKRNDCADALIELSKGGDLESAKVATACRSAIRNGTPLSLPEM HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH QSLLNKWQLTHNPRTCPHGRPIYLPLEESALSRFFRRNWVIGKSHGI HHHHHHHEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA