| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474366
Identifier: 113474366
GI number: 113474366
Start: 798757
End: 800184
Strand: Direct
Name: 113474366
Synonym: Tery_0499
Alternate gene names: NA
Gene position: 798757-800184 (Clockwise)
Preceding gene: 113474365
Following gene: 113474368
Centisome position: 10.31
GC content: 36.83
Gene sequence:
>1428_bases ATGAATCTCGACCGAGAACTAGACGAAACAATATCAAGCTTTGCAGATATTCAAGCAGAACTTAATATCTGTAATGCGAA AGATGCCTTAAAAGAAATCGTAATTAATTTAGACTTAACTCCGGAGGAAAGGGCAGGATTAGACTCTGAAATTTCTGGGT TAGAGTCAATGTTAGAAAAGTTAGAAAAAGCTTCTGTTTATATTGCTGTATTTGGCATGGTAGGCCGAGGTAAGTCTTCA CTTCTTAATGCTTTATTAGGAGAAAAAGTATTTGAAACTGGTCCAATTCATGGTGTTACTAAAACGACAAAAATTAGACA ATGGCAATTAGGAAGAGATAATTTAACGGAAATAGAATCATCATCTACAAATTCTTTAACTTCCTACAGAATATCTCAAG TGGAATTAATTGATACTCCTGGTATAGATGAAGTAGACGGAGAAACTAGGGAATTAATGGCCCGACAGGTGGCAAAACAG GCAGATTTACTTTTATTTGCTGTAGCGGGAGATATTACCCAAGTAGAGTATGAAGCTCTTTCTTATTTAAGAGATGCTGG TAAACCAATTTTACTTGTGTTTAACAAAATAGACCAGTATCCAGAAACAGATAGGTTAGCTATATATAATAAAATTCGCA ATGAGCGAGTTCGTGAATTACTCTCACCAAATGAAATAGTTATGGCTGCTGCTTCTCCACTACTTCCTAAAGCGGTGCCA GCTTCTGATGGTAGTCTCAGAGTAGAGATGGTGCGAGGAGAACCTCAAGTAGAAGACTTAAAGCTGAAAATATTGGAAAT TTTAGATGGAGAAGGTAAGTCTTTGGTGGCCCTCAATAGTATGCTCTATGCTGATGATGTGAATGAACAGTTAGTACGCC GGAAAATGGAAATTCGCTCTCAAAGTGCAGATGGGGTTATATGGAAGGGGGTGATGACAAAAGCAATGGCGATCGCTCTC AACCCTGTGACTGTGGTAGATATTCTCAGTGGGGCGATTATTGATGTATCTATGATATTGACTTTATCAAAGTTATATGG TATAAAAATGAATCAAAGAGGAGCATTAGACTTATTACAAAAGATAGCTATTAGTATGGGTGGTATAACTGCGAGTGAAT TAGTGGCAAATCTAGGATTAAGTTCTGTGAAAGGATTATTGGGTTTAGCTGCACCTGTTACTAGTGGGTTATCTTTAGGG CCCTATTTGTCTGTAGCAGCGACTCAAGCAGCAGTAGGAGGTGTATCATCTTATGGAATTGGGCAAATAACTAAAACATA TCTTGCTAATGGTGCTTCTTGGGGAGAGGAAAGTCCGAAAACAGTAGTTAATAATATTTTGGCATCTTTGGATGAAAATT CGATTATGGGTCGTATTAAGGAAGAATTAATAGCTAAATTAAATATCAAAAATTTTAGTAATCAATAA
Upstream 100 bases:
>100_bases TGTAGATAGAGTAATTAAAATTCCATGTTTAGATCTGTGTTCCAGTAAAAGTAATGTTATTTATTTTCAAGCTAAAAATA TAAGTAAGAAATACCGGAAA
Downstream 100 bases:
>100_bases GAATAGAGACTTTTTCAGCAAATCCTAATTATAGTAAAACTTTCAAACAATAAGGCTCAAAACTCCAATTAATTAAAAGT ATCTAGTATCATCTCTACTA
Product: small GTP-binding protein
Products: NA
Alternate protein names: GTPase SAR1 And Related Small G Proteins; Membrane Associated GTPase; GTPase SAR1 And Related Small G Protein; GTPase SAR1-Like Protein; Dynamin Family Protein
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MNLDRELDETISSFADIQAELNICNAKDALKEIVINLDLTPEERAGLDSEISGLESMLEKLEKASVYIAVFGMVGRGKSS LLNALLGEKVFETGPIHGVTKTTKIRQWQLGRDNLTEIESSSTNSLTSYRISQVELIDTPGIDEVDGETRELMARQVAKQ ADLLLFAVAGDITQVEYEALSYLRDAGKPILLVFNKIDQYPETDRLAIYNKIRNERVRELLSPNEIVMAAASPLLPKAVP ASDGSLRVEMVRGEPQVEDLKLKILEILDGEGKSLVALNSMLYADDVNEQLVRRKMEIRSQSADGVIWKGVMTKAMAIAL NPVTVVDILSGAIIDVSMILTLSKLYGIKMNQRGALDLLQKIAISMGGITASELVANLGLSSVKGLLGLAAPVTSGLSLG PYLSVAATQAAVGGVSSYGIGQITKTYLANGASWGEESPKTVVNNILASLDENSIMGRIKEELIAKLNIKNFSNQ
Sequences:
>Translated_475_residues MNLDRELDETISSFADIQAELNICNAKDALKEIVINLDLTPEERAGLDSEISGLESMLEKLEKASVYIAVFGMVGRGKSS LLNALLGEKVFETGPIHGVTKTTKIRQWQLGRDNLTEIESSSTNSLTSYRISQVELIDTPGIDEVDGETRELMARQVAKQ ADLLLFAVAGDITQVEYEALSYLRDAGKPILLVFNKIDQYPETDRLAIYNKIRNERVRELLSPNEIVMAAASPLLPKAVP ASDGSLRVEMVRGEPQVEDLKLKILEILDGEGKSLVALNSMLYADDVNEQLVRRKMEIRSQSADGVIWKGVMTKAMAIAL NPVTVVDILSGAIIDVSMILTLSKLYGIKMNQRGALDLLQKIAISMGGITASELVANLGLSSVKGLLGLAAPVTSGLSLG PYLSVAATQAAVGGVSSYGIGQITKTYLANGASWGEESPKTVVNNILASLDENSIMGRIKEELIAKLNIKNFSNQ >Mature_475_residues MNLDRELDETISSFADIQAELNICNAKDALKEIVINLDLTPEERAGLDSEISGLESMLEKLEKASVYIAVFGMVGRGKSS LLNALLGEKVFETGPIHGVTKTTKIRQWQLGRDNLTEIESSSTNSLTSYRISQVELIDTPGIDEVDGETRELMARQVAKQ ADLLLFAVAGDITQVEYEALSYLRDAGKPILLVFNKIDQYPETDRLAIYNKIRNERVRELLSPNEIVMAAASPLLPKAVP ASDGSLRVEMVRGEPQVEDLKLKILEILDGEGKSLVALNSMLYADDVNEQLVRRKMEIRSQSADGVIWKGVMTKAMAIAL NPVTVVDILSGAIIDVSMILTLSKLYGIKMNQRGALDLLQKIAISMGGITASELVANLGLSSVKGLLGLAAPVTSGLSLG PYLSVAATQAAVGGVSSYGIGQITKTYLANGASWGEESPKTVVNNILASLDENSIMGRIKEELIAKLNIKNFSNQ
Specific function: Unknown
COG id: COG1100
COG function: function code R; GTPase SAR1 and related small G proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51379; Mature: 51379
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLDRELDETISSFADIQAELNICNAKDALKEIVINLDLTPEERAGLDSEISGLESMLEK CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHH LEKASVYIAVFGMVGRGKSSLLNALLGEKVFETGPIHGVTKTTKIRQWQLGRDNLTEIES HHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCHHHHCC SSTNSLTSYRISQVELIDTPGIDEVDGETRELMARQVAKQADLLLFAVAGDITQVEYEAL CCCCCHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHH SYLRDAGKPILLVFNKIDQYPETDRLAIYNKIRNERVRELLSPNEIVMAAASPLLPKAVP HHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC ASDGSLRVEMVRGEPQVEDLKLKILEILDGEGKSLVALNSMLYADDVNEQLVRRKMEIRS CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHC QSADGVIWKGVMTKAMAIALNPVTVVDILSGAIIDVSMILTLSKLYGIKMNQRGALDLLQ CCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH KIAISMGGITASELVANLGLSSVKGLLGLAAPVTSGLSLGPYLSVAATQAAVGGVSSYGI HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH GQITKTYLANGASWGEESPKTVVNNILASLDENSIMGRIKEELIAKLNIKNFSNQ HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNLDRELDETISSFADIQAELNICNAKDALKEIVINLDLTPEERAGLDSEISGLESMLEK CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHH LEKASVYIAVFGMVGRGKSSLLNALLGEKVFETGPIHGVTKTTKIRQWQLGRDNLTEIES HHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCHHHHCC SSTNSLTSYRISQVELIDTPGIDEVDGETRELMARQVAKQADLLLFAVAGDITQVEYEAL CCCCCHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHH SYLRDAGKPILLVFNKIDQYPETDRLAIYNKIRNERVRELLSPNEIVMAAASPLLPKAVP HHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC ASDGSLRVEMVRGEPQVEDLKLKILEILDGEGKSLVALNSMLYADDVNEQLVRRKMEIRS CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHC QSADGVIWKGVMTKAMAIALNPVTVVDILSGAIIDVSMILTLSKLYGIKMNQRGALDLLQ CCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH KIAISMGGITASELVANLGLSSVKGLLGLAAPVTSGLSLGPYLSVAATQAAVGGVSSYGI HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH GQITKTYLANGASWGEESPKTVVNNILASLDENSIMGRIKEELIAKLNIKNFSNQ HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA