Click here to switch to the map view.

The map label for this gene is 113474288

Identifier: 113474288

GI number: 113474288

Start: 647650

End: 648378

Strand: Direct

Name: 113474288

Synonym: Tery_0413

Alternate gene names: NA

Gene position: 647650-648378 (Clockwise)

Preceding gene: 113474284

Following gene: 161485632

Centisome position: 8.36

GC content: 39.92

Gene sequence:

>729_bases
ATGTCTAGTGAAAAACAACTCAGTCTTTTTGAGTGGTCAAACAATGATGACTCCTTAGTATCTACCCCTAATTCCGACTT
GGAATTTAATCTTATTCCCACAGATGTTAAGATTCCTATTCCATCTGGAGTCTATAAAACAATGGAGCAAATAACATTTC
ATTGTAACCAATGTCGTAGATGTGAACTAGGAGAAAACCGGACTAATGCTGTCATTGGTCGTGGCAACCCCGAAGCAGAA
ATTATGGTTATTGGGGAAGCGCCCGGTCAAAATGAAGATGAACAAGGTCTCCCTTTTGTAGGTAAGTCTGGGCAACTGCT
TGATAAAATTTTGCAGTCTGTGGAGTTAAGTAGCGATCGCCACGTTTATATATCTAATGCCATTAGATGTCGTCCACCAG
AAAACCGGACTCCTACTCTCAAAGAAGTAGGAGCTTGTAAACCCTACCTATTGGAACAAATACGTCTTGTCAACCCGAAA
ATTATTCTTTTAACTGGGGCAACGGCAGTTAAAGCTTTAACAGGAGATAAGCGAGGTATTACTAAAATTCGAGGTCAATG
GATAGAATGGGAGGGGCGACTTTGTATGCCTATTTTTCATCCAGCTTATCTTTTGCGTAACCCCTCTAGGGAACCTGGTA
AACCAAAGTGGTTGATGTGGCAAGATATTCAAGCAGTTAAGCAAAAATTAGAAGAGCTTCAAAGTGATAGTAATTCTTTT
GATTTTTGA

Upstream 100 bases:

>100_bases
GCCTTTAATTTTGAAACTTTCTATTTATTTTTGACTTTTGCATTTTGATAACTAAAAAACGACAACTGACAATTAATAAT
TGACAACTAATAACTGAATT

Downstream 100 bases:

>100_bases
ACAACAAATCAGAATTAATTAGATCTATATAGCAGTCTACCCATTGGTTGTGGCAAAATTCCATACTAAAAAAGTTTGAC
AAAGTTGAATATTTGACCAG

Product: phage SPO1 DNA polymerase-like protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein; Uracil-DNA Glycosylase Family 4 Protein; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage DNA Polymerase; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; N-Terminus Of Phage SPO1 DNA Polymerase

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSSEKQLSLFEWSNNDDSLVSTPNSDLEFNLIPTDVKIPIPSGVYKTMEQITFHCNQCRRCELGENRTNAVIGRGNPEAE
IMVIGEAPGQNEDEQGLPFVGKSGQLLDKILQSVELSSDRHVYISNAIRCRPPENRTPTLKEVGACKPYLLEQIRLVNPK
IILLTGATAVKALTGDKRGITKIRGQWIEWEGRLCMPIFHPAYLLRNPSREPGKPKWLMWQDIQAVKQKLEELQSDSNSF
DF

Sequences:

>Translated_242_residues
MSSEKQLSLFEWSNNDDSLVSTPNSDLEFNLIPTDVKIPIPSGVYKTMEQITFHCNQCRRCELGENRTNAVIGRGNPEAE
IMVIGEAPGQNEDEQGLPFVGKSGQLLDKILQSVELSSDRHVYISNAIRCRPPENRTPTLKEVGACKPYLLEQIRLVNPK
IILLTGATAVKALTGDKRGITKIRGQWIEWEGRLCMPIFHPAYLLRNPSREPGKPKWLMWQDIQAVKQKLEELQSDSNSF
DF
>Mature_241_residues
SSEKQLSLFEWSNNDDSLVSTPNSDLEFNLIPTDVKIPIPSGVYKTMEQITFHCNQCRRCELGENRTNAVIGRGNPEAEI
MVIGEAPGQNEDEQGLPFVGKSGQLLDKILQSVELSSDRHVYISNAIRCRPPENRTPTLKEVGACKPYLLEQIRLVNPKI
ILLTGATAVKALTGDKRGITKIRGQWIEWEGRLCMPIFHPAYLLRNPSREPGKPKWLMWQDIQAVKQKLEELQSDSNSFD
F

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 27349; Mature: 27217

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEKQLSLFEWSNNDDSLVSTPNSDLEFNLIPTDVKIPIPSGVYKTMEQITFHCNQCRR
CCCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCC
CELGENRTNAVIGRGNPEAEIMVIGEAPGQNEDEQGLPFVGKSGQLLDKILQSVELSSDR
CCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCC
HVYISNAIRCRPPENRTPTLKEVGACKPYLLEQIRLVNPKIILLTGATAVKALTGDKRGI
EEEEECCEEECCCCCCCCCHHHHCCCCHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCH
TKIRGQWIEWEGRLCMPIFHPAYLLRNPSREPGKPKWLMWQDIQAVKQKLEELQSDSNSF
HHHCCCEEEECCCEEEHHHCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC
DF
CC
>Mature Secondary Structure 
SSEKQLSLFEWSNNDDSLVSTPNSDLEFNLIPTDVKIPIPSGVYKTMEQITFHCNQCRR
CCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCC
CELGENRTNAVIGRGNPEAEIMVIGEAPGQNEDEQGLPFVGKSGQLLDKILQSVELSSDR
CCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCC
HVYISNAIRCRPPENRTPTLKEVGACKPYLLEQIRLVNPKIILLTGATAVKALTGDKRGI
EEEEECCEEECCCCCCCCCHHHHCCCCHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCH
TKIRGQWIEWEGRLCMPIFHPAYLLRNPSREPGKPKWLMWQDIQAVKQKLEELQSDSNSF
HHHCCCEEEECCCEEEHHHCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC
DF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA