Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474287
Identifier: 113474287
GI number: 113474287
Start: 645965
End: 646633
Strand: Reverse
Name: 113474287
Synonym: Tery_0412
Alternate gene names: NA
Gene position: 646633-645965 (Counterclockwise)
Preceding gene: 113474289
Following gene: 113474286
Centisome position: 8.34
GC content: 41.11
Gene sequence:
>669_bases ATGTCATCTATACATATCTTCCATGATCGCACTGATGCCGGAACAAAATTGGCTGAAGTTATTTTTTCCAGCTTTGGCGA TGAAAATTTGACGAGAAATTGGCAACTCAACCCCATTGTTTATGCTCTACCAAGAGGAGGGTTGCCAGTAGCAGTGCCAG TAGCTCGTCGGTTAGGTTGTCCATTGAGTGTCGTAGTAGCCAAGAAAATTACTTTACCGTCTAACCCAGAATTAGCACTG GGCGCTATAACGGCAGATGGTTGTTTAGTTTGGTCAAAGTACAAACCACGAAGTTTAGAAGTTCAATATACTTTGATTCA AAAAACACAGCAAAGGGCTTTATCTCAATTAGAAAAGCTGAGTGTGGGAAAACCTGGTATTAGTTCCCTAGATAGGTTAG TGATTTTGATTGATGATGGAATAGCTACAGGAATGACGATGATAGCTGCAATTAAGTCTATTCAGTTACAAAAACCTAAT ACTGTTTGGATCTGTGTACCAGTTGCTCCTCGACAGTTACTTGAAGAGTTGAGGCAGTTTTGCGATCGCTTAATTGTGTT GGAAACTCCTTGCCCGTTCGTCAGTGTGAGTCGGTTTTATAGCAAGTTTACTCAAGTGACAACTGAGGCAGCTTTAGCTT GTTTACAGCAACAGATGGAGTGGTTATAG
Upstream 100 bases:
>100_bases AGCTAACAAACAGTTATTGGTGTTAGGTTTCACTATAATTATACCTAAGTTAAATTTTTTAGGTGTGTCACTTCTGTACT AGTAGTTGGAGACCCAAATT
Downstream 100 bases:
>100_bases CTGAAGTTATTTCAGTTATTAATGCTTCTGCAATTTCTGGGAAAAAGTTTTGAGAAAAGAATGCTATACTTAAGTGATGT TTTAATTATTAAGTCGCTCA
Product: phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSSIHIFHDRTDAGTKLAEVIFSSFGDENLTRNWQLNPIVYALPRGGLPVAVPVARRLGCPLSVVVAKKITLPSNPELAL GAITADGCLVWSKYKPRSLEVQYTLIQKTQQRALSQLEKLSVGKPGISSLDRLVILIDDGIATGMTMIAAIKSIQLQKPN TVWICVPVAPRQLLEELRQFCDRLIVLETPCPFVSVSRFYSKFTQVTTEAALACLQQQMEWL
Sequences:
>Translated_222_residues MSSIHIFHDRTDAGTKLAEVIFSSFGDENLTRNWQLNPIVYALPRGGLPVAVPVARRLGCPLSVVVAKKITLPSNPELAL GAITADGCLVWSKYKPRSLEVQYTLIQKTQQRALSQLEKLSVGKPGISSLDRLVILIDDGIATGMTMIAAIKSIQLQKPN TVWICVPVAPRQLLEELRQFCDRLIVLETPCPFVSVSRFYSKFTQVTTEAALACLQQQMEWL >Mature_221_residues SSIHIFHDRTDAGTKLAEVIFSSFGDENLTRNWQLNPIVYALPRGGLPVAVPVARRLGCPLSVVVAKKITLPSNPELALG AITADGCLVWSKYKPRSLEVQYTLIQKTQQRALSQLEKLSVGKPGISSLDRLVILIDDGIATGMTMIAAIKSIQLQKPNT VWICVPVAPRQLLEELRQFCDRLIVLETPCPFVSVSRFYSKFTQVTTEAALACLQQQMEWL
Specific function: Unknown
COG id: COG1926
COG function: function code R; Predicted phosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the dienelactone hydrolase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002925 - InterPro: IPR000836 [H]
Pfam domain/function: PF01738 DLH; PF00156 Pribosyltran [H]
EC number: NA
Molecular weight: Translated: 24591; Mature: 24460
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIHIFHDRTDAGTKLAEVIFSSFGDENLTRNWQLNPIVYALPRGGLPVAVPVARRLGC CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEECCCCCCEEHHHHHHHCC PLSVVVAKKITLPSNPELALGAITADGCLVWSKYKPRSLEVQYTLIQKTQQRALSQLEKL CEEEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHH SVGKPGISSLDRLVILIDDGIATGMTMIAAIKSIQLQKPNTVWICVPVAPRQLLEELRQF CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHH CDRLIVLETPCPFVSVSRFYSKFTQVTTEAALACLQQQMEWL HHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSIHIFHDRTDAGTKLAEVIFSSFGDENLTRNWQLNPIVYALPRGGLPVAVPVARRLGC CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEECCCCCCEEHHHHHHHCC PLSVVVAKKITLPSNPELALGAITADGCLVWSKYKPRSLEVQYTLIQKTQQRALSQLEKL CEEEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHH SVGKPGISSLDRLVILIDDGIATGMTMIAAIKSIQLQKPNTVWICVPVAPRQLLEELRQF CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHH CDRLIVLETPCPFVSVSRFYSKFTQVTTEAALACLQQQMEWL HHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]