| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474236
Identifier: 113474236
GI number: 113474236
Start: 548063
End: 548857
Strand: Direct
Name: 113474236
Synonym: Tery_0355
Alternate gene names: NA
Gene position: 548063-548857 (Clockwise)
Preceding gene: 113474235
Following gene: 113474237
Centisome position: 7.07
GC content: 31.19
Gene sequence:
>795_bases ATGAACATGAATCTACAAGAACAAAATTGGATAAATTTATTCGGAGATCTTTCTCCAGAAGGAATAGCTTGGTATGGTAT TTGGACTAGATATTCTCCAAAATTAGAAGTTATAACATCTTTTCAAGGTATCAGAAATTTGTCAGCTAATAATAATAAAA CAGTAATTACTCATCGTAATAATTATACTTATGCTGATGGTAGTACGAAAGAAATACAATGGCTTCTTGATAAAGAAATT GCCAATCAACCAGATGGAATAATTCATTCGGGAGCAGAATCTATGAGGGTATTATCTTTCAGTGAAGAAGCCAAAACTTC GATATGCCCACAATTAAAAATAGAGAATCCTTTCGGTTGTGAATTGTTTTTCCAACATCAAAATTTTCGGACTAGCGTTG TCGTTATTTATGGAGAAAATGGCGAGCTAGCAAGATTTACACAAATTCGCGAACATCTAAATAGTTATCCAGACCAAAAA CCAGGAGCAAATTTAAATAATATATCAGGAAATTGGGTTAGAAAAAAACAATCTATGACTCCAGATTTACAAGTTTTTCA AGAACCAGAGATGAGAGAAATTGAGTTAAATCTAACTACAGGTAAAAATCAAACATTTTTCCTACCTGATGCTATAGTTA TCAATGTTCCTCAACAGCTAAAAATAGGAGAAGAATTTGAAATTTTAGTAGGTAAGATGGTGATAGAAAATAAGTATAAA AGGATGATTGTTAAATACGATAAAAATGGCAAATTTATCCAGTTAATTTCTGAAGTTTTTGACCGGAAAGATTAA
Upstream 100 bases:
>100_bases TAGGGATAGAAGTTAGTAATGGTTCTAATTTTTGCGAGTGGTATATATGGGGATAATAATCAGGTAAAATAGTACAAAAT CAAGATAAATTTGAGAATAC
Downstream 100 bases:
>100_bases ACTGGCTGGAAAAGTAGTAATTTTGGTTATTAGTTATGGGTACTTTTGTAAACAATGCATTAAAAATAGCATCAAGCCTT TATATAGTCTAGGTTTGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MNMNLQEQNWINLFGDLSPEGIAWYGIWTRYSPKLEVITSFQGIRNLSANNNKTVITHRNNYTYADGSTKEIQWLLDKEI ANQPDGIIHSGAESMRVLSFSEEAKTSICPQLKIENPFGCELFFQHQNFRTSVVVIYGENGELARFTQIREHLNSYPDQK PGANLNNISGNWVRKKQSMTPDLQVFQEPEMREIELNLTTGKNQTFFLPDAIVINVPQQLKIGEEFEILVGKMVIENKYK RMIVKYDKNGKFIQLISEVFDRKD
Sequences:
>Translated_264_residues MNMNLQEQNWINLFGDLSPEGIAWYGIWTRYSPKLEVITSFQGIRNLSANNNKTVITHRNNYTYADGSTKEIQWLLDKEI ANQPDGIIHSGAESMRVLSFSEEAKTSICPQLKIENPFGCELFFQHQNFRTSVVVIYGENGELARFTQIREHLNSYPDQK PGANLNNISGNWVRKKQSMTPDLQVFQEPEMREIELNLTTGKNQTFFLPDAIVINVPQQLKIGEEFEILVGKMVIENKYK RMIVKYDKNGKFIQLISEVFDRKD >Mature_264_residues MNMNLQEQNWINLFGDLSPEGIAWYGIWTRYSPKLEVITSFQGIRNLSANNNKTVITHRNNYTYADGSTKEIQWLLDKEI ANQPDGIIHSGAESMRVLSFSEEAKTSICPQLKIENPFGCELFFQHQNFRTSVVVIYGENGELARFTQIREHLNSYPDQK PGANLNNISGNWVRKKQSMTPDLQVFQEPEMREIELNLTTGKNQTFFLPDAIVINVPQQLKIGEEFEILVGKMVIENKYK RMIVKYDKNGKFIQLISEVFDRKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30530; Mature: 30530
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMNLQEQNWINLFGDLSPEGIAWYGIWTRYSPKLEVITSFQGIRNLSANNNKTVITHRN CCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCEEEEHHHHHHCCCCCCCEEEEEECC NYTYADGSTKEIQWLLDKEIANQPDGIIHSGAESMRVLSFSEEAKTSICPQLKIENPFGC CEEECCCCHHHHHEEECHHHCCCCCCCEECCCCCEEEEEECHHHHHHCCCCEEECCCCCE ELFFQHQNFRTSVVVIYGENGELARFTQIREHLNSYPDQKPGANLNNISGNWVRKKQSMT EEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCC PDLQVFQEPEMREIELNLTTGKNQTFFLPDAIVINVPQQLKIGEEFEILVGKMVIENKYK CCHHHHCCCCCEEEEEEEECCCCEEEECCCEEEEECCHHCCCCCHHHHHHHHHHHHCCCE RMIVKYDKNGKFIQLISEVFDRKD EEEEEECCCCCHHHHHHHHHCCCC >Mature Secondary Structure MNMNLQEQNWINLFGDLSPEGIAWYGIWTRYSPKLEVITSFQGIRNLSANNNKTVITHRN CCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCEEEEHHHHHHCCCCCCCEEEEEECC NYTYADGSTKEIQWLLDKEIANQPDGIIHSGAESMRVLSFSEEAKTSICPQLKIENPFGC CEEECCCCHHHHHEEECHHHCCCCCCCEECCCCCEEEEEECHHHHHHCCCCEEECCCCCE ELFFQHQNFRTSVVVIYGENGELARFTQIREHLNSYPDQKPGANLNNISGNWVRKKQSMT EEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCC PDLQVFQEPEMREIELNLTTGKNQTFFLPDAIVINVPQQLKIGEEFEILVGKMVIENKYK CCHHHHCCCCCEEEEEEEECCCCEEEECCCEEEEECCHHCCCCCHHHHHHHHHHHHCCCE RMIVKYDKNGKFIQLISEVFDRKD EEEEEECCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA