Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474191

Identifier: 113474191

GI number: 113474191

Start: 459720

End: 460340

Strand: Direct

Name: 113474191

Synonym: Tery_0300

Alternate gene names: NA

Gene position: 459720-460340 (Clockwise)

Preceding gene: 113474190

Following gene: 113474192

Centisome position: 5.93

GC content: 32.05

Gene sequence:

>621_bases
ATGAACTGTCAAGAACTCTTAAAAAAATACTCTGAACAATGGCAAGCAGCTACTGTACATCCATTTTTAAATGAATGTAA
ATTAGGTACTATTAAACCTAAACAATTTAATACTTGGCTAGTACAAGATTATTTATTTGTTGTGGAGTTTACTCGAATGG
TAGGTAGAATTTTAACCTATGCTCCAACTTCTCATTTTGATGTGATTCTTATGGGAATAAATGCTTTGCAAGATGAACTA
AATTGGTTTCAAGATAAAGCCAGAGAAAGACAATTAAATTTGAATATTGAAAAACAATCTACTTGTGCAGAATACGGCAT
TTTTATGAATAAACTAACAGAAATGCCATACCCAATACAAGCAACTGCATTATGGGAAATTGAATTAGCTTATAATCAAG
GTTGGCAATTACCAGGAGAAATGTTAATGCCTTATAATGAATTTGCCAATCGTTGGGGAAATCCAGAATTTACAAACTAT
GTTAAACTATTAGAGGCACAAGCTAATGATGTATTGGCAAGTGCCTCAAAAACAGTACAAAGTCAATCTGAAGCTACTTT
TTTAAATGTCGCTAGACTGGAAAAAGATTTTTGGCAAATGGCGTATAATGCGACTAATTAA

Upstream 100 bases:

>100_bases
GGTTAGAGTTAGCAGAGATAGATTCTTAAATTATAGTATAATAAATAATATTTAGTAAAATATAATTCAGTTATTTCAGT
TATCAGGATAATTTAATGGC

Downstream 100 bases:

>100_bases
ATTTAGGAGAAATTAAAAAAATGACACGAGCTATCATGGAAACAGAGAAGGGGACAATTAATCTAGAATTGTTTGATAAT
GATGCTCCTAATACTGTAAA

Product: TenA family transcription regulator

Products: NA

Alternate protein names: TENA/THI-4 Family; Transcriptional Activator TenA Family; Transcriptional Regulator; TenA Family Transcriptional Activator; Transcriptional Activator; Transcriptional Activator Tena Family

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNCQELLKKYSEQWQAATVHPFLNECKLGTIKPKQFNTWLVQDYLFVVEFTRMVGRILTYAPTSHFDVILMGINALQDEL
NWFQDKARERQLNLNIEKQSTCAEYGIFMNKLTEMPYPIQATALWEIELAYNQGWQLPGEMLMPYNEFANRWGNPEFTNY
VKLLEAQANDVLASASKTVQSQSEATFLNVARLEKDFWQMAYNATN

Sequences:

>Translated_206_residues
MNCQELLKKYSEQWQAATVHPFLNECKLGTIKPKQFNTWLVQDYLFVVEFTRMVGRILTYAPTSHFDVILMGINALQDEL
NWFQDKARERQLNLNIEKQSTCAEYGIFMNKLTEMPYPIQATALWEIELAYNQGWQLPGEMLMPYNEFANRWGNPEFTNY
VKLLEAQANDVLASASKTVQSQSEATFLNVARLEKDFWQMAYNATN
>Mature_206_residues
MNCQELLKKYSEQWQAATVHPFLNECKLGTIKPKQFNTWLVQDYLFVVEFTRMVGRILTYAPTSHFDVILMGINALQDEL
NWFQDKARERQLNLNIEKQSTCAEYGIFMNKLTEMPYPIQATALWEIELAYNQGWQLPGEMLMPYNEFANRWGNPEFTNY
VKLLEAQANDVLASASKTVQSQSEATFLNVARLEKDFWQMAYNATN

Specific function: Unknown

COG id: COG0819

COG function: function code K; Putative transcription activator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24031; Mature: 24031

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCQELLKKYSEQWQAATVHPFLNECKLGTIKPKQFNTWLVQDYLFVVEFTRMVGRILTY
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
APTSHFDVILMGINALQDELNWFQDKARERQLNLNIEKQSTCAEYGIFMNKLTEMPYPIQ
CCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCE
ATALWEIELAYNQGWQLPGEMLMPYNEFANRWGNPEFTNYVKLLEAQANDVLASASKTVQ
EEEEEEEEEEECCCCCCCHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SQSEATFLNVARLEKDFWQMAYNATN
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNCQELLKKYSEQWQAATVHPFLNECKLGTIKPKQFNTWLVQDYLFVVEFTRMVGRILTY
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
APTSHFDVILMGINALQDELNWFQDKARERQLNLNIEKQSTCAEYGIFMNKLTEMPYPIQ
CCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCE
ATALWEIELAYNQGWQLPGEMLMPYNEFANRWGNPEFTNYVKLLEAQANDVLASASKTVQ
EEEEEEEEEEECCCCCCCHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SQSEATFLNVARLEKDFWQMAYNATN
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA