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The map label for this gene is yfmR [H]

Identifier: 113474190

GI number: 113474190

Start: 457720

End: 459648

Strand: Direct

Name: yfmR [H]

Synonym: Tery_0299

Alternate gene names: 113474190

Gene position: 457720-459648 (Clockwise)

Preceding gene: 113474189

Following gene: 113474191

Centisome position: 5.91

GC content: 33.28

Gene sequence:

>1929_bases
ATGAGTATGTTCACACTTCAATCAGTCAAAAAAGACTTTGGTATCAAAGAAATTTTAAAAGATGCCAGCTTCAGTTTAGA
TCCTAAGGACAAAGTTGGTTTAATTGGTACAAATGGCTCAGGAAAATCAACTCTTTTAAAAATGATTGCTGGTTTAGAAC
CCACAGATAGCGGTGAAATTTTAGTTAATCAAAATGTGAGGATTATTTATTTGCCTCAACAACCAGATTTGAATGAAAAT
AATACTGTATTAGAACAGGTTTTTGCCAACAGTGGTAAACAAACGGCACTGATAAAAGAGTACCAAGAACTATCAGAAAA
ACTAGCTCATTATCCAGAAGATAGTCAGTTAATGGCGCGTTTTTCACAGGTAACTCAAAAGATGAATTATACTAATGCTT
GGGAATTAGAAACTAAGGCTAAAATCATCTTGAGTAAATTAGGAATTCAAGATTTTGAGGTTAAAGTTGGTAATTTATCT
GGGGGTTATCGTAAACGAATTGCTTTAGGGACAGCCTTACTTTCTGAACCTGATGTTTTGTTAATGGATGAGCCAACAAA
CCATCTAGATGCTATGTCTGTAGAATGGTTACAAAGTTACTTAAAGACTTTTTCTGGAGCAATTTTATTAATTACTCACG
ACCGTTATTTTCTTGACCGGGTTACTAATAAAATTCTGGAAATAGACCGAGGAGATATTTACACTTATTCTGGTAACTAT
TCCTACTATTTAGAAAAAAAAGCTTTAGCTGAAGAATCTATCGTAAGTTCTCAAAAGAAGCATAAAGGTCTATTACGTAG
AGAATTAGAATGGTTAAAACGAGGACCAAAAGCTCGCAGCACTAAACAAAAAGCTCGAATTCAACGCATAGAAGAAATGC
AAGGAAGAGAATTCAAAGAATCTTTAGGAAAGGTAGATATTTCTACTGCTGGTCGTCGAATTGGCAAAAAGGTTATTGAG
TTAGAAAATATTTCTAAATCTTATAATGGTAGAACTATAATTAAAGATTTTACTTATGAGTTTATCCCAGAAGATAGAGT
AGGAATTATTGGTAGTAATGGTATGGGAAAATCAACCTTAATGGATATTATTACAGGTAGGGTAAAACCTGATTATGGCA
AAGTAGAAATTGGGACAACAATACATATAGGTTATTTTGACCAATATTCAGAAAACTTGCTGGATGCTGGGGCTGAAAAT
CAACGGGTTATAGATTATATAAAAGATGTGGCAGAATATGTTCAAACTGCAGATGGTACTCAAATTAGTGCTTCTCAAAT
GTTGGAAAGATTTATGTTTCCAGGTAATCAACAATATGCTCCTATCTATAAACTTTCTGGTGGGGAAAAAAGACGATTAT
TTCTGTTGAAAGTATTGATGAGTGCTCCTAATGTTTTGATTTTGGATGAACCAACTAATGATTTGGATGTACAAACTTTG
GCGGTGTTGGAAGAATATCTCGAAGAGTTTAATGGTTGTGTAATTGTGGTTTCTCATGATCGCTATTTTCTTGATAGAAC
TGTAGATAGAATTTTTGCTTTTGAAGGGGTAGGAAATTTACGACAATATCCAGGAAATTATTCACTTTATTTAGATTATA
AAGAAGCAGAAGCAACAGCAAAAAAATTTTCAGAAGTTGAGGAAAAGCTAAAAGAAAGTCAGCCTAAACAACAAAAATCA
GAAAGAGTTTCTCGTGATCAAAGGGGGCAAAGAAAATTATCATCAAAAGAGAAACGAGAATATGAGAACTTAGAGAAAAA
AATTGCTCAGTTAGAAACTGAGAAAGCTGAAGCAGAAAATGAACTTTATAATTCACCTCCAACAGAGGTTAGTGAAGTTC
AAAAACTTCATGAAAAGGTAGAAGGTTTAGGACAAGAAATTGATATTGCTACAGAAAGATGGTTAGAGTTAGCAGAGATA
GATTCTTAA

Upstream 100 bases:

>100_bases
ATTTTTTACAGCGTTTGCTTTAAGCTATAATTCATGTATAATCTAAATTATAGTTGAATTAGTTAAAAAAGATTATTGTT
TTATAGTTGATCATAAAATT

Downstream 100 bases:

>100_bases
ATTATAGTATAATAAATAATATTTAGTAAAATATAATTCAGTTATTTCAGTTATCAGGATAATTTAATGGCATGAACTGT
CAAGAACTCTTAAAAAAATA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 641

Protein sequence:

>642_residues
MSMFTLQSVKKDFGIKEILKDASFSLDPKDKVGLIGTNGSGKSTLLKMIAGLEPTDSGEILVNQNVRIIYLPQQPDLNEN
NTVLEQVFANSGKQTALIKEYQELSEKLAHYPEDSQLMARFSQVTQKMNYTNAWELETKAKIILSKLGIQDFEVKVGNLS
GGYRKRIALGTALLSEPDVLLMDEPTNHLDAMSVEWLQSYLKTFSGAILLITHDRYFLDRVTNKILEIDRGDIYTYSGNY
SYYLEKKALAEESIVSSQKKHKGLLRRELEWLKRGPKARSTKQKARIQRIEEMQGREFKESLGKVDISTAGRRIGKKVIE
LENISKSYNGRTIIKDFTYEFIPEDRVGIIGSNGMGKSTLMDIITGRVKPDYGKVEIGTTIHIGYFDQYSENLLDAGAEN
QRVIDYIKDVAEYVQTADGTQISASQMLERFMFPGNQQYAPIYKLSGGEKRRLFLLKVLMSAPNVLILDEPTNDLDVQTL
AVLEEYLEEFNGCVIVVSHDRYFLDRTVDRIFAFEGVGNLRQYPGNYSLYLDYKEAEATAKKFSEVEEKLKESQPKQQKS
ERVSRDQRGQRKLSSKEKREYENLEKKIAQLETEKAEAENELYNSPPTEVSEVQKLHEKVEGLGQEIDIATERWLELAEI
DS

Sequences:

>Translated_642_residues
MSMFTLQSVKKDFGIKEILKDASFSLDPKDKVGLIGTNGSGKSTLLKMIAGLEPTDSGEILVNQNVRIIYLPQQPDLNEN
NTVLEQVFANSGKQTALIKEYQELSEKLAHYPEDSQLMARFSQVTQKMNYTNAWELETKAKIILSKLGIQDFEVKVGNLS
GGYRKRIALGTALLSEPDVLLMDEPTNHLDAMSVEWLQSYLKTFSGAILLITHDRYFLDRVTNKILEIDRGDIYTYSGNY
SYYLEKKALAEESIVSSQKKHKGLLRRELEWLKRGPKARSTKQKARIQRIEEMQGREFKESLGKVDISTAGRRIGKKVIE
LENISKSYNGRTIIKDFTYEFIPEDRVGIIGSNGMGKSTLMDIITGRVKPDYGKVEIGTTIHIGYFDQYSENLLDAGAEN
QRVIDYIKDVAEYVQTADGTQISASQMLERFMFPGNQQYAPIYKLSGGEKRRLFLLKVLMSAPNVLILDEPTNDLDVQTL
AVLEEYLEEFNGCVIVVSHDRYFLDRTVDRIFAFEGVGNLRQYPGNYSLYLDYKEAEATAKKFSEVEEKLKESQPKQQKS
ERVSRDQRGQRKLSSKEKREYENLEKKIAQLETEKAEAENELYNSPPTEVSEVQKLHEKVEGLGQEIDIATERWLELAEI
DS
>Mature_641_residues
SMFTLQSVKKDFGIKEILKDASFSLDPKDKVGLIGTNGSGKSTLLKMIAGLEPTDSGEILVNQNVRIIYLPQQPDLNENN
TVLEQVFANSGKQTALIKEYQELSEKLAHYPEDSQLMARFSQVTQKMNYTNAWELETKAKIILSKLGIQDFEVKVGNLSG
GYRKRIALGTALLSEPDVLLMDEPTNHLDAMSVEWLQSYLKTFSGAILLITHDRYFLDRVTNKILEIDRGDIYTYSGNYS
YYLEKKALAEESIVSSQKKHKGLLRRELEWLKRGPKARSTKQKARIQRIEEMQGREFKESLGKVDISTAGRRIGKKVIEL
ENISKSYNGRTIIKDFTYEFIPEDRVGIIGSNGMGKSTLMDIITGRVKPDYGKVEIGTTIHIGYFDQYSENLLDAGAENQ
RVIDYIKDVAEYVQTADGTQISASQMLERFMFPGNQQYAPIYKLSGGEKRRLFLLKVLMSAPNVLILDEPTNDLDVQTLA
VLEEYLEEFNGCVIVVSHDRYFLDRTVDRIFAFEGVGNLRQYPGNYSLYLDYKEAEATAKKFSEVEEKLKESQPKQQKSE
RVSRDQRGQRKLSSKEKREYENLEKKIAQLETEKAEAENELYNSPPTEVSEVQKLHEKVEGLGQEIDIATERWLELAEID
S

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=531, Percent_Identity=26.9303201506591, Blast_Score=209, Evalue=9e-54,
Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=28.0373831775701, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=28.0373831775701, Blast_Score=193, Evalue=4e-49,
Organism=Homo sapiens, GI69354671, Length=529, Percent_Identity=30.0567107750473, Blast_Score=186, Evalue=7e-47,
Organism=Homo sapiens, GI10947135, Length=529, Percent_Identity=30.0567107750473, Blast_Score=186, Evalue=8e-47,
Organism=Homo sapiens, GI31657092, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI9955963, Length=211, Percent_Identity=29.3838862559242, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=571, Percent_Identity=37.3029772329247, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1787182, Length=647, Percent_Identity=33.0757341576507, Blast_Score=355, Evalue=6e-99,
Organism=Escherichia coli, GI1789751, Length=617, Percent_Identity=29.9837925445705, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1787041, Length=544, Percent_Identity=29.5955882352941, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI1786975, Length=500, Percent_Identity=25.2, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788165, Length=203, Percent_Identity=29.5566502463054, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1789672, Length=263, Percent_Identity=27.3764258555133, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1790525, Length=549, Percent_Identity=22.2222222222222, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786872, Length=250, Percent_Identity=27.2, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788897, Length=528, Percent_Identity=21.0227272727273, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=270, Percent_Identity=28.5185185185185, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=25.9842519685039, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789891, Length=251, Percent_Identity=25.4980079681275, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI48994997, Length=220, Percent_Identity=23.6363636363636, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789873, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI48994943, Length=260, Percent_Identity=23.8461538461538, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI48994883, Length=228, Percent_Identity=26.7543859649123, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=545, Percent_Identity=27.7064220183486, Blast_Score=220, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17555318, Length=535, Percent_Identity=27.2897196261682, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17553372, Length=520, Percent_Identity=27.8846153846154, Blast_Score=186, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI17565586, Length=208, Percent_Identity=26.4423076923077, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=285, Percent_Identity=25.6140350877193, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=285, Percent_Identity=25.6140350877193, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=285, Percent_Identity=25.6140350877193, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=236, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=527, Percent_Identity=29.4117647058824, Blast_Score=214, Evalue=3e-56,
Organism=Saccharomyces cerevisiae, GI6321121, Length=555, Percent_Identity=28.1081081081081, Blast_Score=199, Evalue=2e-51,
Organism=Saccharomyces cerevisiae, GI6324314, Length=388, Percent_Identity=26.0309278350515, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=387, Percent_Identity=25.8397932816537, Blast_Score=124, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6325030, Length=242, Percent_Identity=28.9256198347107, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322980, Length=279, Percent_Identity=27.9569892473118, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=28.8888888888889, Blast_Score=220, Evalue=2e-57,
Organism=Drosophila melanogaster, GI24641342, Length=559, Percent_Identity=29.1592128801431, Blast_Score=212, Evalue=6e-55,
Organism=Drosophila melanogaster, GI24642252, Length=556, Percent_Identity=28.5971223021583, Blast_Score=199, Evalue=6e-51,
Organism=Drosophila melanogaster, GI18859989, Length=556, Percent_Identity=28.5971223021583, Blast_Score=199, Evalue=6e-51,
Organism=Drosophila melanogaster, GI116007184, Length=266, Percent_Identity=27.4436090225564, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221500365, Length=266, Percent_Identity=27.4436090225564, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI19920532, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580930, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73185; Mature: 73054

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMFTLQSVKKDFGIKEILKDASFSLDPKDKVGLIGTNGSGKSTLLKMIAGLEPTDSGEI
CCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCE
LVNQNVRIIYLPQQPDLNENNTVLEQVFANSGKQTALIKEYQELSEKLAHYPEDSQLMAR
EEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FSQVTQKMNYTNAWELETKAKIILSKLGIQDFEVKVGNLSGGYRKRIALGTALLSEPDVL
HHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE
LMDEPTNHLDAMSVEWLQSYLKTFSGAILLITHDRYFLDRVTNKILEIDRGDIYTYSGNY
EECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCE
SYYLEKKALAEESIVSSQKKHKGLLRRELEWLKRGPKARSTKQKARIQRIEEMQGREFKE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
SLGKVDISTAGRRIGKKVIELENISKSYNGRTIIKDFTYEFIPEDRVGIIGSNGMGKSTL
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCEEEEECCCCCHHHH
MDIITGRVKPDYGKVEIGTTIHIGYFDQYSENLLDAGAENQRVIDYIKDVAEYVQTADGT
HHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
QISASQMLERFMFPGNQQYAPIYKLSGGEKRRLFLLKVLMSAPNVLILDEPTNDLDVQTL
EECHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
AVLEEYLEEFNGCVIVVSHDRYFLDRTVDRIFAFEGVGNLRQYPGNYSLYLDYKEAEATA
HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEHHHHHHH
KKFSEVEEKLKESQPKQQKSERVSRDQRGQRKLSSKEKREYENLEKKIAQLETEKAEAEN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELYNSPPTEVSEVQKLHEKVEGLGQEIDIATERWLELAEIDS
HHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SMFTLQSVKKDFGIKEILKDASFSLDPKDKVGLIGTNGSGKSTLLKMIAGLEPTDSGEI
CCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCE
LVNQNVRIIYLPQQPDLNENNTVLEQVFANSGKQTALIKEYQELSEKLAHYPEDSQLMAR
EEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FSQVTQKMNYTNAWELETKAKIILSKLGIQDFEVKVGNLSGGYRKRIALGTALLSEPDVL
HHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE
LMDEPTNHLDAMSVEWLQSYLKTFSGAILLITHDRYFLDRVTNKILEIDRGDIYTYSGNY
EECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCE
SYYLEKKALAEESIVSSQKKHKGLLRRELEWLKRGPKARSTKQKARIQRIEEMQGREFKE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
SLGKVDISTAGRRIGKKVIELENISKSYNGRTIIKDFTYEFIPEDRVGIIGSNGMGKSTL
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCEEEEECCCCCHHHH
MDIITGRVKPDYGKVEIGTTIHIGYFDQYSENLLDAGAENQRVIDYIKDVAEYVQTADGT
HHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
QISASQMLERFMFPGNQQYAPIYKLSGGEKRRLFLLKVLMSAPNVLILDEPTNDLDVQTL
EECHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
AVLEEYLEEFNGCVIVVSHDRYFLDRTVDRIFAFEGVGNLRQYPGNYSLYLDYKEAEATA
HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEHHHHHHH
KKFSEVEEKLKESQPKQQKSERVSRDQRGQRKLSSKEKREYENLEKKIAQLETEKAEAEN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELYNSPPTEVSEVQKLHEKVEGLGQEIDIATERWLELAEIDS
HHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]