| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is dps [C]
Identifier: 110835494
GI number: 110835494
Start: 2981572
End: 2982072
Strand: Reverse
Name: dps [C]
Synonym: ABO_2633
Alternate gene names: 110835494
Gene position: 2982072-2981572 (Counterclockwise)
Preceding gene: 110835499
Following gene: 110835493
Centisome position: 95.57
GC content: 54.69
Gene sequence:
>501_bases ATGGGACCCCCTTGGCGCTGCAGGCAAGGACAAAACTGGAAAAGGAGACTCGCCATGATTGAACATAACAAGCAGGTCGC GGAAGAACTAAGCAAACTACTGGCCGAGAGCTACACGCTTTATCTCAAAACGCACAAGTACCACTGGAATGTGACTGGCC CTATGTTTCATAGCCTGCACCTGTTGTTTGAACAGCAATACATTGAGCTGGCGGAAGCGGTGGACACCATTGCTGAACGT ATCCGTGCGTTGGGCTGGAAAGCGCCAGGCAGCTACACCGAGTTTGCTAAGTTGTCCACGGTGCAGGATGCCACCGGCGA TCCGGATGCATCGGATATGATCAAAGAGCTGGCAGAGGATCACCGTACTGTGGCGGAGCGGGCCAACCGGGTATTGAAGC TGGCCAGCGAACATGAGGATGAAGGTTCTGGTGCGGTCGCCAGTAACCGGATCGAGATTCACGAGAAATCCGCGTGGATG CTCTCGGCGCATCTGGGTTGA
Upstream 100 bases:
>100_bases ATCTTCTAATCATGTGGCCAGTGAAGAGGCTGGCAGCCAAGCAATCCTGCTATTGAAATGCATTTTGCTGGCCCAATGGT ATTAAGCAGCCCAGCAAACA
Downstream 100 bases:
>100_bases TCTTCCTATAGCAATAGGCAATCGCCTGGATAGGATTAATCGTCTTTATTGATTTTTCTAGGGTGGCTATTCTCGATCTT GTGCTTGAGAAAGCCGCCCT
Product: DNA-binding stress protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MGPPWRCRQGQNWKRRLAMIEHNKQVAEELSKLLAESYTLYLKTHKYHWNVTGPMFHSLHLLFEQQYIELAEAVDTIAER IRALGWKAPGSYTEFAKLSTVQDATGDPDASDMIKELAEDHRTVAERANRVLKLASEHEDEGSGAVASNRIEIHEKSAWM LSAHLG
Sequences:
>Translated_166_residues MGPPWRCRQGQNWKRRLAMIEHNKQVAEELSKLLAESYTLYLKTHKYHWNVTGPMFHSLHLLFEQQYIELAEAVDTIAER IRALGWKAPGSYTEFAKLSTVQDATGDPDASDMIKELAEDHRTVAERANRVLKLASEHEDEGSGAVASNRIEIHEKSAWM LSAHLG >Mature_165_residues GPPWRCRQGQNWKRRLAMIEHNKQVAEELSKLLAESYTLYLKTHKYHWNVTGPMFHSLHLLFEQQYIELAEAVDTIAERI RALGWKAPGSYTEFAKLSTVQDATGDPDASDMIKELAEDHRTVAERANRVLKLASEHEDEGSGAVASNRIEIHEKSAWML SAHLG
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18910; Mature: 18778
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00818 DPS_1 ; PS00819 DPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPPWRCRQGQNWKRRLAMIEHNKQVAEELSKLLAESYTLYLKTHKYHWNVTGPMFHSLH CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEEEEEECCCCHHHHHHH LLFEQQYIELAEAVDTIAERIRALGWKAPGSYTEFAKLSTVQDATGDPDASDMIKELAED HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH HRTVAERANRVLKLASEHEDEGSGAVASNRIEIHEKSAWMLSAHLG HHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEECCCCEEEEECCC >Mature Secondary Structure GPPWRCRQGQNWKRRLAMIEHNKQVAEELSKLLAESYTLYLKTHKYHWNVTGPMFHSLH CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEEEEEECCCCHHHHHHH LLFEQQYIELAEAVDTIAERIRALGWKAPGSYTEFAKLSTVQDATGDPDASDMIKELAED HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH HRTVAERANRVLKLASEHEDEGSGAVASNRIEIHEKSAWMLSAHLG HHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEECCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]