| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is pfeA [H]
Identifier: 110835342
GI number: 110835342
Start: 2812258
End: 2814531
Strand: Reverse
Name: pfeA [H]
Synonym: ABO_2481
Alternate gene names: 110835342
Gene position: 2814531-2812258 (Counterclockwise)
Preceding gene: 110835343
Following gene: 110835339
Centisome position: 90.21
GC content: 53.87
Gene sequence:
>2274_bases ATGAAGCGGTCTTTGGGAATGCCAATTCTGGTAGGTGTTGTGGCTAACGGCTTAGCTATGCCGGCGGTTGCGCAAGAGAA TACGGTCCATGAACTGGGTGCGGTCACGGTAGTTTCTGCCGCTGGTTTCGAGCAGAAAATTACCGATGCCCCAGCCAGTA TTTCGGTAATTAGCCAACAGGAACTGCATAGCCGGCCTTTCACCTCCGTGGTGGATGCGGTGCGTGAGCTGGAAGGGGTC GACGTGGGGGAAACCCGTGACAAGACGGGCCAGTCCACTATCTCCATGCGCGGCATGGGGGCGGACTATACGCTAATCCT CATTGATGGCCGCCGGCAAAATAACCACGGCGATATCTACCCCAACAATTTTGGCGGCAACCAGTTTAATCATATGCCGC CGCTAGAAGCCATTGAGCGCATCGAAGTTATCCGTGGGCCGTCGTCCACTCTTTATGGTGCGGATGCCATTGGTGGGGTG ATTAATATCATCACCAAAAAAGAGTATGAAAAATGGGGCGGCAGCATCAACGTGAGTCGCACTATTCAGGAATATGACCA GTACGGTGATGCGACCTCAACGGATTTCTCCGTGTCTGGCCCGTTGGGCGATCAGTTTGGCCTGGCGTTGCGAGGCAGTC TCTACGACCAGGATGCATCTAGCCCGGAATACGATCCGGTGACCGATCCTAGTGGGGTACTTCAGGAGCGAGAACTGGGT TTCGGCAGTGGTGGTCGTACTGTAGACAATGAGGACACGGCTCTGGGTTTCACTTTGAGATGGACCCCCACGGATAATCA GCGTATCTCGCTCGATTATGATGATTCCGTGCAAACCTACGACAACTCAGAGAGTCAGTTGGGTACCCATGATAGCGCTG ACCGCCTACCTCGGGCGGGCTATGCACAAGACCAGGAGTTCACCCGTGAGCAAATAGCGCTGACTCACGAGGGCGAGTGG GGCTTTGGTTTGAGCAATGTTTCGTTGACCTATTTGTCCACCAATAATGAAGGGCGCACCTTGCCACTAACCGCGGATGA GCGTCAGCAATATGACGATATCGTTGCGACCAATGCGGATTGTGTTGCGGATGCCGGCAGTGACGCCTGCCTTGCCGTGC TAGGCTCCACTTTCTTACCACGCCCGGAGCGGACTTTGGAAAGCAGCGAGCTGCGCCTGGACGGTAAGCTGGACCTGCCC ATCAATGATCAGCACTTTGTGGTGGTAGGTACCCAGATTCTTCGCGGTGAGTTGGAAGATGGCGTGTTCGGCCTAGAGAG TGGTGACGCGGGCGAGGTGTTTGAGAATAATTTCTGGGCGCTGTATGCCGAAGATAACTGGACGCCGGTGGAGCCGTTTA CGCTGACAGCGGGTGTGCGTTACGACAACCATGAAACCTTTGGCGATCAGATTAGCCCGCGCCTCTATGGTGTTTATACG CTTTCACCAAGCTGGACAGTGAAAGGCGGTGTCAGCACGGGCTATAAGACCCCCAAAACCATTGACTTATACGACGGCAT TACCGGCTTTGGCGGGCAGGGCACACGCCCCTGGGTGGGCAACCCGGATTTGGAGCCGGAAACCAGCGTCAATTCTGAAA TCGCTCTTTATTGGGAAAGTCCGAACCGACATAGCGCTAACCTGACGGTGTTCCATAACGACTTTAAAGACAAGATTGTT CGCCAAGACAGCGCGTTGTGTTCAGCCACTGGTGGACAAACGCCCTGTGTGGACCTAGGGGACTATGACACGGTGGACGG CATTGTTACCTGGCCAATGAATGTGGATGAAGCGGTGATTCAAGGTGTGGAAGTGGCAGGGCGCTACCAGATCTCTTCCC GCTGGTCATTACGTGCCAATTACACCTATATCGACAGTGAACAGACAAGTGGTGAAGAGAAAGGTTACTCACTTACGGGC ACCGCTCGGCATATGTTTAACGGCACGCTGGATTGGCAAACCACCCAGGCGTTTGCCATGTTTCTGACGGTAGAAGGGCG CCAAGATCGCTTCCGGGGCTTTGGCAGTACAGATGCCAGCGGTGGTGAATACTGGAAGAACTATGAGATTTATCACCTTG GTGCCCGTTTGGCGCTCAACAAATCTGTTACCTTGCATGCCCGGATTAACAACCTGCTGGATGAAGACTTTACTTCCTAT GATGTGGGCTTCGTGGATGACGGTAGCGGTGGCTATGATGTGGAGTACTACGATGACTACAACAATAAGGATGCCCGTCG TAACTTCTGGGTGGGTCTGCAAGCGACCTTCTAA
Upstream 100 bases:
>100_bases ACAAACATCACAAAATAAATATTGTTCGCATTTGATAATGGTTATTGTTTAGGGAATGCTCTCCCCCGTTTTGATTGATA TGGCAATACGGGGGTAGAGG
Downstream 100 bases:
>100_bases GTGATGTTCCGAAAACTGGGCTGCACTCAAGTGTCGTCGTGAGATTGAAAATAAAACGGCATGGTGAAGGAATTCGCCAT GCCGTTTTACTATTGCGCGA
Product: outer membrane ferric enterobactin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MKRSLGMPILVGVVANGLAMPAVAQENTVHELGAVTVVSAAGFEQKITDAPASISVISQQELHSRPFTSVVDAVRELEGV DVGETRDKTGQSTISMRGMGADYTLILIDGRRQNNHGDIYPNNFGGNQFNHMPPLEAIERIEVIRGPSSTLYGADAIGGV INIITKKEYEKWGGSINVSRTIQEYDQYGDATSTDFSVSGPLGDQFGLALRGSLYDQDASSPEYDPVTDPSGVLQERELG FGSGGRTVDNEDTALGFTLRWTPTDNQRISLDYDDSVQTYDNSESQLGTHDSADRLPRAGYAQDQEFTREQIALTHEGEW GFGLSNVSLTYLSTNNEGRTLPLTADERQQYDDIVATNADCVADAGSDACLAVLGSTFLPRPERTLESSELRLDGKLDLP INDQHFVVVGTQILRGELEDGVFGLESGDAGEVFENNFWALYAEDNWTPVEPFTLTAGVRYDNHETFGDQISPRLYGVYT LSPSWTVKGGVSTGYKTPKTIDLYDGITGFGGQGTRPWVGNPDLEPETSVNSEIALYWESPNRHSANLTVFHNDFKDKIV RQDSALCSATGGQTPCVDLGDYDTVDGIVTWPMNVDEAVIQGVEVAGRYQISSRWSLRANYTYIDSEQTSGEEKGYSLTG TARHMFNGTLDWQTTQAFAMFLTVEGRQDRFRGFGSTDASGGEYWKNYEIYHLGARLALNKSVTLHARINNLLDEDFTSY DVGFVDDGSGGYDVEYYDDYNNKDARRNFWVGLQATF
Sequences:
>Translated_757_residues MKRSLGMPILVGVVANGLAMPAVAQENTVHELGAVTVVSAAGFEQKITDAPASISVISQQELHSRPFTSVVDAVRELEGV DVGETRDKTGQSTISMRGMGADYTLILIDGRRQNNHGDIYPNNFGGNQFNHMPPLEAIERIEVIRGPSSTLYGADAIGGV INIITKKEYEKWGGSINVSRTIQEYDQYGDATSTDFSVSGPLGDQFGLALRGSLYDQDASSPEYDPVTDPSGVLQERELG FGSGGRTVDNEDTALGFTLRWTPTDNQRISLDYDDSVQTYDNSESQLGTHDSADRLPRAGYAQDQEFTREQIALTHEGEW GFGLSNVSLTYLSTNNEGRTLPLTADERQQYDDIVATNADCVADAGSDACLAVLGSTFLPRPERTLESSELRLDGKLDLP INDQHFVVVGTQILRGELEDGVFGLESGDAGEVFENNFWALYAEDNWTPVEPFTLTAGVRYDNHETFGDQISPRLYGVYT LSPSWTVKGGVSTGYKTPKTIDLYDGITGFGGQGTRPWVGNPDLEPETSVNSEIALYWESPNRHSANLTVFHNDFKDKIV RQDSALCSATGGQTPCVDLGDYDTVDGIVTWPMNVDEAVIQGVEVAGRYQISSRWSLRANYTYIDSEQTSGEEKGYSLTG TARHMFNGTLDWQTTQAFAMFLTVEGRQDRFRGFGSTDASGGEYWKNYEIYHLGARLALNKSVTLHARINNLLDEDFTSY DVGFVDDGSGGYDVEYYDDYNNKDARRNFWVGLQATF >Mature_757_residues MKRSLGMPILVGVVANGLAMPAVAQENTVHELGAVTVVSAAGFEQKITDAPASISVISQQELHSRPFTSVVDAVRELEGV DVGETRDKTGQSTISMRGMGADYTLILIDGRRQNNHGDIYPNNFGGNQFNHMPPLEAIERIEVIRGPSSTLYGADAIGGV INIITKKEYEKWGGSINVSRTIQEYDQYGDATSTDFSVSGPLGDQFGLALRGSLYDQDASSPEYDPVTDPSGVLQERELG FGSGGRTVDNEDTALGFTLRWTPTDNQRISLDYDDSVQTYDNSESQLGTHDSADRLPRAGYAQDQEFTREQIALTHEGEW GFGLSNVSLTYLSTNNEGRTLPLTADERQQYDDIVATNADCVADAGSDACLAVLGSTFLPRPERTLESSELRLDGKLDLP INDQHFVVVGTQILRGELEDGVFGLESGDAGEVFENNFWALYAEDNWTPVEPFTLTAGVRYDNHETFGDQISPRLYGVYT LSPSWTVKGGVSTGYKTPKTIDLYDGITGFGGQGTRPWVGNPDLEPETSVNSEIALYWESPNRHSANLTVFHNDFKDKIV RQDSALCSATGGQTPCVDLGDYDTVDGIVTWPMNVDEAVIQGVEVAGRYQISSRWSLRANYTYIDSEQTSGEEKGYSLTG TARHMFNGTLDWQTTQAFAMFLTVEGRQDRFRGFGSTDASGGEYWKNYEIYHLGARLALNKSVTLHARINNLLDEDFTSY DVGFVDDGSGGYDVEYYDDYNNKDARRNFWVGLQATF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG4771
COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=737, Percent_Identity=32.0217096336499, Blast_Score=302, Evalue=4e-83, Organism=Escherichia coli, GI1786798, Length=750, Percent_Identity=27.6, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI1790405, Length=194, Percent_Identity=35.0515463917526, Blast_Score=94, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83236; Mature: 83236
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSLGMPILVGVVANGLAMPAVAQENTVHELGAVTVVSAAGFEQKITDAPASISVISQQ CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCHHHHCCCCCEEEEEEHH ELHSRPFTSVVDAVRELEGVDVGETRDKTGQSTISMRGMGADYTLILIDGRRQNNHGDIY HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC PNNFGGNQFNHMPPLEAIERIEVIRGPSSTLYGADAIGGVINIITKKEYEKWGGSINVSR CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHEEHHHHHHHHCCCEEEEHH TIQEYDQYGDATSTDFSVSGPLGDQFGLALRGSLYDQDASSPEYDPVTDPSGVLQERELG HHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCC FGSGGRTVDNEDTALGFTLRWTPTDNQRISLDYDDSVQTYDNSESQLGTHDSADRLPRAG CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHCCCCCCHHHCCCCC YAQDQEFTREQIALTHEGEWGFGLSNVSLTYLSTNNEGRTLPLTADERQQYDDIVATNAD CCCCHHHHHHHEEEEECCCCCCCCCCEEEEEEEECCCCCEEECCCHHHHHHHHHHCCCCC CVADAGSDACLAVLGSTFLPRPERTLESSELRLDGKLDLPINDQHFVVVGTQILRGELED CEECCCCCHHHHHHCCCCCCCCCHHCCCCCEEECCEECCCCCCCEEEEEEHHHHHCCCCC GVFGLESGDAGEVFENNFWALYAEDNWTPVEPFTLTAGVRYDNHETFGDQISPRLYGVYT CEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE LSPSWTVKGGVSTGYKTPKTIDLYDGITGFGGQGTRPWVGNPDLEPETSVNSEIALYWES ECCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC PNRHSANLTVFHNDFKDKIVRQDSALCSATGGQTPCVDLGDYDTVDGIVTWPMNVDEAVI CCCCCCEEEEEECCHHHHHHHCCCCCEECCCCCCCEEECCCCCCCCCEEECCCCCCHHHH QGVEVAGRYQISSRWSLRANYTYIDSEQTSGEEKGYSLTGTARHMFNGTLDWQTTQAFAM CCHHEEEEEEECCCEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHCCCCCCCCCEEEEE FLTVEGRQDRFRGFGSTDASGGEYWKNYEIYHLGARLALNKSVTLHARINNLLDEDFTSY EEEEECCHHHHCCCCCCCCCCCCHHCCEEEEEECEEEEECCCEEEEEHHHHHHHCCCCCC DVGFVDDGSGGYDVEYYDDYNNKDARRNFWVGLQATF CCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKRSLGMPILVGVVANGLAMPAVAQENTVHELGAVTVVSAAGFEQKITDAPASISVISQQ CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCHHHHCCCCCEEEEEEHH ELHSRPFTSVVDAVRELEGVDVGETRDKTGQSTISMRGMGADYTLILIDGRRQNNHGDIY HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC PNNFGGNQFNHMPPLEAIERIEVIRGPSSTLYGADAIGGVINIITKKEYEKWGGSINVSR CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHEEHHHHHHHHCCCEEEEHH TIQEYDQYGDATSTDFSVSGPLGDQFGLALRGSLYDQDASSPEYDPVTDPSGVLQERELG HHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCC FGSGGRTVDNEDTALGFTLRWTPTDNQRISLDYDDSVQTYDNSESQLGTHDSADRLPRAG CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHCCCCCCHHHCCCCC YAQDQEFTREQIALTHEGEWGFGLSNVSLTYLSTNNEGRTLPLTADERQQYDDIVATNAD CCCCHHHHHHHEEEEECCCCCCCCCCEEEEEEEECCCCCEEECCCHHHHHHHHHHCCCCC CVADAGSDACLAVLGSTFLPRPERTLESSELRLDGKLDLPINDQHFVVVGTQILRGELED CEECCCCCHHHHHHCCCCCCCCCHHCCCCCEEECCEECCCCCCCEEEEEEHHHHHCCCCC GVFGLESGDAGEVFENNFWALYAEDNWTPVEPFTLTAGVRYDNHETFGDQISPRLYGVYT CEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE LSPSWTVKGGVSTGYKTPKTIDLYDGITGFGGQGTRPWVGNPDLEPETSVNSEIALYWES ECCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC PNRHSANLTVFHNDFKDKIVRQDSALCSATGGQTPCVDLGDYDTVDGIVTWPMNVDEAVI CCCCCCEEEEEECCHHHHHHHCCCCCEECCCCCCCEEECCCCCCCCCEEECCCCCCHHHH QGVEVAGRYQISSRWSLRANYTYIDSEQTSGEEKGYSLTGTARHMFNGTLDWQTTQAFAM CCHHEEEEEEECCCEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHCCCCCCCCCEEEEE FLTVEGRQDRFRGFGSTDASGGEYWKNYEIYHLGARLALNKSVTLHARINNLLDEDFTSY EEEEECCHHHHCCCCCCCCCCCCHHCCEEEEEECEEEEECCCEEEEEHHHHHHHCCCCCC DVGFVDDGSGGYDVEYYDDYNNKDARRNFWVGLQATF CCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]