Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110835194

Identifier: 110835194

GI number: 110835194

Start: 2660379

End: 2661104

Strand: Direct

Name: 110835194

Synonym: ABO_2333

Alternate gene names: NA

Gene position: 2660379-2661104 (Clockwise)

Preceding gene: 110835193

Following gene: 110835195

Centisome position: 85.26

GC content: 59.78

Gene sequence:

>726_bases
ATGACGGATCAAACTCCAGCCAGCGCCGACCAGGTTGCCACCTATCTGCGTGACCATGCCGATTTCTTTCAGCATCGCCC
GGAGCTACTGGAATTGTTACGTCTCCCAGACCCCAAAGGCGAGGCGGTTTCCCTACTGGAACGTCAGGCCGCCATTCTAC
GTGAGCGCAACACCGAGCTGCGCGATCGACTCAATGGCCTGCTGGATGTGGCCCGGGAAAACGATCACCTGTTCGACAAG
ACCCGCCGCCTGACACTGGCCCTGCTGGAAGCCCGCGGCCCCGAGAAGCTGTTTCGCAATTTGCTCACCAGCCTGAGCAG
CGACTTCCATTGTGACCAGGTAGCCCTAATGCTGTACGACCGGGAAGTGCCCATTCTCGGCGACCTGCGCAACCAGATCC
GCTGCGTGGACAGCGATGCCCTGCCCAGCGCCCTGAACCACCTGCTGCGCAGCGGCAAAGCCGTGTGCGGCGCCATGCGC
ACAGAAGAAATGGACGCCCTGTTCCAAGATAACGCCACCGATATCCGCTCCGCCGCCATGGTGCCACTGGAATACCAAGG
CCGCTTGGGCCTGCTGGCCATTGGCAGTAAAAGTGCCATGCACTTCCGTAGCTCCTTAGGCACCTTATTCATTAGCCATA
TCGGCCAGGTACTCAGCCGCAGACTCCACGAAGTGGTGCGCCAATACCCCCACCAAGCAGCCAAAAAAACCAGCGACATT
AGCTGA

Upstream 100 bases:

>100_bases
TGTCTATGATGGCGCTATTGAGATCGCGCTTTAGCAAACGATTGAAAGCTCGGTGATGTCAGTGCCCACTGACCGGAACG
AAAAACAAAGGACAGGATTG

Downstream 100 bases:

>100_bases
TAAAGGACCGTTAACCGTGGATAGCGATAGCCATAACACACTGCAAACGGTTAACACCTTCCTAACCCACTTGGCCAGCG
AGCGTCGCCTCTCACCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDK
TRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMR
TEEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI
S

Sequences:

>Translated_241_residues
MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDK
TRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMR
TEEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI
S
>Mature_240_residues
TDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDKT
RRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRT
EEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDIS

Specific function: Unknown

COG id: COG3159

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27165; Mature: 27034

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTEL
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
RDRLNGLLDVARENDHLFDKTRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC
REVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRTEEMDALFQDNATDIRSAAM
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
VPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI
CCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
S
C
>Mature Secondary Structure 
TDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTEL
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
RDRLNGLLDVARENDHLFDKTRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC
REVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRTEEMDALFQDNATDIRSAAM
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
VPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI
CCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA