| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835194
Identifier: 110835194
GI number: 110835194
Start: 2660379
End: 2661104
Strand: Direct
Name: 110835194
Synonym: ABO_2333
Alternate gene names: NA
Gene position: 2660379-2661104 (Clockwise)
Preceding gene: 110835193
Following gene: 110835195
Centisome position: 85.26
GC content: 59.78
Gene sequence:
>726_bases ATGACGGATCAAACTCCAGCCAGCGCCGACCAGGTTGCCACCTATCTGCGTGACCATGCCGATTTCTTTCAGCATCGCCC GGAGCTACTGGAATTGTTACGTCTCCCAGACCCCAAAGGCGAGGCGGTTTCCCTACTGGAACGTCAGGCCGCCATTCTAC GTGAGCGCAACACCGAGCTGCGCGATCGACTCAATGGCCTGCTGGATGTGGCCCGGGAAAACGATCACCTGTTCGACAAG ACCCGCCGCCTGACACTGGCCCTGCTGGAAGCCCGCGGCCCCGAGAAGCTGTTTCGCAATTTGCTCACCAGCCTGAGCAG CGACTTCCATTGTGACCAGGTAGCCCTAATGCTGTACGACCGGGAAGTGCCCATTCTCGGCGACCTGCGCAACCAGATCC GCTGCGTGGACAGCGATGCCCTGCCCAGCGCCCTGAACCACCTGCTGCGCAGCGGCAAAGCCGTGTGCGGCGCCATGCGC ACAGAAGAAATGGACGCCCTGTTCCAAGATAACGCCACCGATATCCGCTCCGCCGCCATGGTGCCACTGGAATACCAAGG CCGCTTGGGCCTGCTGGCCATTGGCAGTAAAAGTGCCATGCACTTCCGTAGCTCCTTAGGCACCTTATTCATTAGCCATA TCGGCCAGGTACTCAGCCGCAGACTCCACGAAGTGGTGCGCCAATACCCCCACCAAGCAGCCAAAAAAACCAGCGACATT AGCTGA
Upstream 100 bases:
>100_bases TGTCTATGATGGCGCTATTGAGATCGCGCTTTAGCAAACGATTGAAAGCTCGGTGATGTCAGTGCCCACTGACCGGAACG AAAAACAAAGGACAGGATTG
Downstream 100 bases:
>100_bases TAAAGGACCGTTAACCGTGGATAGCGATAGCCATAACACACTGCAAACGGTTAACACCTTCCTAACCCACTTGGCCAGCG AGCGTCGCCTCTCACCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDK TRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMR TEEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI S
Sequences:
>Translated_241_residues MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDK TRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMR TEEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI S >Mature_240_residues TDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTELRDRLNGLLDVARENDHLFDKT RRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYDREVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRT EEMDALFQDNATDIRSAAMVPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDIS
Specific function: Unknown
COG id: COG3159
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27165; Mature: 27034
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTEL CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH RDRLNGLLDVARENDHLFDKTRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC REVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRTEEMDALFQDNATDIRSAAM CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHC VPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI CCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC S C >Mature Secondary Structure TDQTPASADQVATYLRDHADFFQHRPELLELLRLPDPKGEAVSLLERQAAILRERNTEL CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH RDRLNGLLDVARENDHLFDKTRRLTLALLEARGPEKLFRNLLTSLSSDFHCDQVALMLYD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC REVPILGDLRNQIRCVDSDALPSALNHLLRSGKAVCGAMRTEEMDALFQDNATDIRSAAM CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHC VPLEYQGRLGLLAIGSKSAMHFRSSLGTLFISHIGQVLSRRLHEVVRQYPHQAAKKTSDI CCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA