| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is asmA [C]
Identifier: 110835145
GI number: 110835145
Start: 2603277
End: 2605484
Strand: Direct
Name: asmA [C]
Synonym: ABO_2284
Alternate gene names: 110835145
Gene position: 2603277-2605484 (Clockwise)
Preceding gene: 110835143
Following gene: 110835146
Centisome position: 83.43
GC content: 56.48
Gene sequence:
>2208_bases ATGGGACGCCTGTTAAAAATTTTGCTGATCACTTTGTTTGCCATCATTGTGCTATTAGCCATTGCCGTTTTTGTGATCAC GCAGGTGATTGATCCCAACGAATTCAAGCCGGAAATCGAAAAACAGGCGCAAGAGCAGGCCAACCTGACACTGGATATTC AGGGCGACCTGGCCTGGCAGTTCTGGCCATCGCTGGGTGTCAGCCTTGGGCGCACCGAAGCACGCATTGCCGATGACGAA GAGTTGTTCGCGGCCCTCGACGAAGCCAGCGTCAGCGTTGCCGTATTACCGCTGCTGTATGGCCAGGTGGAAATGGACGG CATCACCCTTGCGGGTCTGGATGTGAACCTGGTGGACGGCCCGGACGGCGCTAACTGGGAACAGATCGGCCCGCAGACGC CGGCAGAAGACACCGCCACCGAAGAAGAGCCCGCAGCCGAAGAAGACAGCACCAGCCTGGACATTCCGCTGACCATTCCC AAAGTCGTCGTCAGCGACGGCAAGGTCCGCTATCGCAACACCGCCGACGGCACCGACATCATCGTCGAGCACTTTAACCT GAACGCCCAGGACGTGAACCTGGATGAGCCCTTCCCGCTGCAGATGTCCCTGCGCTATCAGGACCAGAGCGACATGCGCG TGGACATGAATCTGGACACGGTACTGGCCGCCGATATCGACAATAACCATTTCGTCCTCAACCCGATGACCCTGGATGCC AATATCGCCGGCGCCACCACCATGCCGGTGGATGTGCATCTGGAACAGAATCTGGACGTGAACCTGAACGAGGACACCGT CTCCATCAAGGACCTGCTACTGCAAGCCGCCGGCACCGAAACCAAAGGCAACGTGGACATCACTGCCCTCACCGGCGACA TGCAGCTCAGCGGCAAGCTGGCCACCGCGCCTTTCGATGCCAACAAAGTACTGGAAGCCATTGGCGAGGCCCCCATCGAA ACCACCGACAGCCAAGCACTGAGCAACATTGCCCTAGAGGCCACCTTGGGCGGCGAGCCCGGCAGCGTCATGGCCAGCCC GCTCACCGTGACCCTGGATGACAGCACCCTCCGTGGGAGCGCTGGTCTAGCCAGCCTGGAAAGCGGAAAAATCGTCTTTG ATCTGACGCTCGATAAAATCACTCTAGATGGCTACATGCCTCCCGCCAGCGGCGAAACTGAAACCGCGGCACCTGGCGGC GGCAAAACCGGCGGCACCAATAGCCTCAGCGACGCAGAATTGATCCCCGTGGACACGCTGCGCCCATTACGGGTAGACGG CAAACTGGCCATCGGCAGTCTCAACTATGACGGCATCAGCGCCAGCGATATGAAATTTGCGGTTACCGCCAACAACGGCG TCCTCAAATTGACCCAAGCCACCGGCAACACCCTGGGCGGCAGTTTCAGCGCCAACGGCACGCTAAATGTCGCCGGCAGC ACCCCAAAAATTTCGGCCACTAACAAAATCAGCAGCGTACAAATTCAGCCCATCGCCCAGATGGCACTCGACGACGATCT CGCCAAGGGTATTTTTTCCATGTCCGGCAGCTACAGCGCTAATGGCAACAGTGAAAAAGCACTGATGAACTCCGCTAAAG GCAACATCGATCTAAGCCTGGCTGACGCCACTGTGCGCGGCCTGAACCTGTACGACACCCTGGTAGGTGGCGTGAACGAC ATGTTGGGTCAATTTCAGGGATTAGCAGCCGCCCTAATTCCCAACCAAGAATCGGGCAAGCTGCCTTCCCCTCTATCCGA AGACACCAAAATTCTTGACCTTAAAACCAAGGCTCGGCTGGACAAGAACGTAGCCTATCTCGACAGTCTTAATGCCACCC TCAGCAAGGGTGAATTAAGCGGTAGCGGCTGGATGAACATACTCAACCAAGACTTCGACCTGAAAATTGGCATGCAGTCA CCAGAGTTGGGCACATCCAAGTATTTGCAAGGCACCACCTGGCCACTACGTTGTGAAGGCAACCTAGGCGGCAGCCCGGC CAAATGGTGCGGCCCTGACAAGGATGGCTTCAAGGACATTGGTAAACAGGTCGCCGCTAACGCCACCAAGGACAAGCTAA AAGACAAATTCGGCATTGAAGGTGAGGGTGACACCACCGAAGAAATCCTCAAGGATGCCGCACAAAAGAAAGCCAAGGAC GAAATCAACAAACAGCTACAGGACGGCCTAAAGAAACTGTTTAATTAA
Upstream 100 bases:
>100_bases CCTAACGTCACAATAACAATCATGAATAATGCTACGGTATGGTCAGTGAATCCCCACTGCTATAATCACGGTCCAACGAC CAACGCGCAAGGAGTGCTAC
Downstream 100 bases:
>100_bases AAACCGCGGTGTATTTCACACGCACGCGGCCGCTAAACCGAACCGCAATCGTAGGGCGAAAGCAAACCAACGTCAGCTTT CGCCCTACCCACCCGGAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: AsmA Protein; AsmA Family; Outer Membrane Protein Assembly Protein AsmA; AsmA Family Superfamily; Protein Involved In Outer Membrane Biogenesis AsmA Family; Assembly Protein
Number of amino acids: Translated: 735; Mature: 734
Protein sequence:
>735_residues MGRLLKILLITLFAIIVLLAIAVFVITQVIDPNEFKPEIEKQAQEQANLTLDIQGDLAWQFWPSLGVSLGRTEARIADDE ELFAALDEASVSVAVLPLLYGQVEMDGITLAGLDVNLVDGPDGANWEQIGPQTPAEDTATEEEPAAEEDSTSLDIPLTIP KVVVSDGKVRYRNTADGTDIIVEHFNLNAQDVNLDEPFPLQMSLRYQDQSDMRVDMNLDTVLAADIDNNHFVLNPMTLDA NIAGATTMPVDVHLEQNLDVNLNEDTVSIKDLLLQAAGTETKGNVDITALTGDMQLSGKLATAPFDANKVLEAIGEAPIE TTDSQALSNIALEATLGGEPGSVMASPLTVTLDDSTLRGSAGLASLESGKIVFDLTLDKITLDGYMPPASGETETAAPGG GKTGGTNSLSDAELIPVDTLRPLRVDGKLAIGSLNYDGISASDMKFAVTANNGVLKLTQATGNTLGGSFSANGTLNVAGS TPKISATNKISSVQIQPIAQMALDDDLAKGIFSMSGSYSANGNSEKALMNSAKGNIDLSLADATVRGLNLYDTLVGGVND MLGQFQGLAAALIPNQESGKLPSPLSEDTKILDLKTKARLDKNVAYLDSLNATLSKGELSGSGWMNILNQDFDLKIGMQS PELGTSKYLQGTTWPLRCEGNLGGSPAKWCGPDKDGFKDIGKQVAANATKDKLKDKFGIEGEGDTTEEILKDAAQKKAKD EINKQLQDGLKKLFN
Sequences:
>Translated_735_residues MGRLLKILLITLFAIIVLLAIAVFVITQVIDPNEFKPEIEKQAQEQANLTLDIQGDLAWQFWPSLGVSLGRTEARIADDE ELFAALDEASVSVAVLPLLYGQVEMDGITLAGLDVNLVDGPDGANWEQIGPQTPAEDTATEEEPAAEEDSTSLDIPLTIP KVVVSDGKVRYRNTADGTDIIVEHFNLNAQDVNLDEPFPLQMSLRYQDQSDMRVDMNLDTVLAADIDNNHFVLNPMTLDA NIAGATTMPVDVHLEQNLDVNLNEDTVSIKDLLLQAAGTETKGNVDITALTGDMQLSGKLATAPFDANKVLEAIGEAPIE TTDSQALSNIALEATLGGEPGSVMASPLTVTLDDSTLRGSAGLASLESGKIVFDLTLDKITLDGYMPPASGETETAAPGG GKTGGTNSLSDAELIPVDTLRPLRVDGKLAIGSLNYDGISASDMKFAVTANNGVLKLTQATGNTLGGSFSANGTLNVAGS TPKISATNKISSVQIQPIAQMALDDDLAKGIFSMSGSYSANGNSEKALMNSAKGNIDLSLADATVRGLNLYDTLVGGVND MLGQFQGLAAALIPNQESGKLPSPLSEDTKILDLKTKARLDKNVAYLDSLNATLSKGELSGSGWMNILNQDFDLKIGMQS PELGTSKYLQGTTWPLRCEGNLGGSPAKWCGPDKDGFKDIGKQVAANATKDKLKDKFGIEGEGDTTEEILKDAAQKKAKD EINKQLQDGLKKLFN >Mature_734_residues GRLLKILLITLFAIIVLLAIAVFVITQVIDPNEFKPEIEKQAQEQANLTLDIQGDLAWQFWPSLGVSLGRTEARIADDEE LFAALDEASVSVAVLPLLYGQVEMDGITLAGLDVNLVDGPDGANWEQIGPQTPAEDTATEEEPAAEEDSTSLDIPLTIPK VVVSDGKVRYRNTADGTDIIVEHFNLNAQDVNLDEPFPLQMSLRYQDQSDMRVDMNLDTVLAADIDNNHFVLNPMTLDAN IAGATTMPVDVHLEQNLDVNLNEDTVSIKDLLLQAAGTETKGNVDITALTGDMQLSGKLATAPFDANKVLEAIGEAPIET TDSQALSNIALEATLGGEPGSVMASPLTVTLDDSTLRGSAGLASLESGKIVFDLTLDKITLDGYMPPASGETETAAPGGG KTGGTNSLSDAELIPVDTLRPLRVDGKLAIGSLNYDGISASDMKFAVTANNGVLKLTQATGNTLGGSFSANGTLNVAGST PKISATNKISSVQIQPIAQMALDDDLAKGIFSMSGSYSANGNSEKALMNSAKGNIDLSLADATVRGLNLYDTLVGGVNDM LGQFQGLAAALIPNQESGKLPSPLSEDTKILDLKTKARLDKNVAYLDSLNATLSKGELSGSGWMNILNQDFDLKIGMQSP ELGTSKYLQGTTWPLRCEGNLGGSPAKWCGPDKDGFKDIGKQVAANATKDKLKDKFGIEGEGDTTEEILKDAAQKKAKDE INKQLQDGLKKLFN
Specific function: Involved In The Inhibition Of Assembly Of Mutant Ompf Proteins. In General, Could Be Involved In The Assembly Of Outer Membrane Proteins. [C]
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788378, Length=327, Percent_Identity=22.9357798165138, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77840; Mature: 77709
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRLLKILLITLFAIIVLLAIAVFVITQVIDPNEFKPEIEKQAQEQANLTLDIQGDLAWQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCEEEE FWPSLGVSLGRTEARIADDEELFAALDEASVSVAVLPLLYGQVEMDGITLAGLDVNLVDG ECHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHCEEEECCEEEECEEEEEECC PDGANWEQIGPQTPAEDTATEEEPAAEEDSTSLDIPLTIPKVVVSDGKVRYRNTADGTDI CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCCCEE IVEHFNLNAQDVNLDEPFPLQMSLRYQDQSDMRVDMNLDTVLAADIDNNHFVLNPMTLDA EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEEECCCCEEEEEEEEECC NIAGATTMPVDVHLEQNLDVNLNEDTVSIKDLLLQAAGTETKGNVDITALTGDMQLSGKL CCCCCEECEEEEEEECCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECCEE ATAPFDANKVLEAIGEAPIETTDSQALSNIALEATLGGEPGSVMASPLTVTLDDSTLRGS EECCCCHHHHHHHHCCCCCCCCCHHHHHHEEEEEEECCCCCCEEECCEEEEECCCCCCCC AGLASLESGKIVFDLTLDKITLDGYMPPASGETETAAPGGGKTGGTNSLSDAELIPVDTL CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC RPLRVDGKLAIGSLNYDGISASDMKFAVTANNGVLKLTQATGNTLGGSFSANGTLNVAGS CCEEECCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEECCCEEEECCC TPKISATNKISSVQIQPIAQMALDDDLAKGIFSMSGSYSANGNSEKALMNSAKGNIDLSL CCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEE ADATVRGLNLYDTLVGGVNDMLGQFQGLAAALIPNQESGKLPSPLSEDTKILDLKTKARL ECCEECCCCHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHH DKNVAYLDSLNATLSKGELSGSGWMNILNQDFDLKIGMQSPELGTSKYLQGTTWPLRCEG CCCCHHHHHCCCHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCHHHCCCCCCEEEECC NLGGSPAKWCGPDKDGFKDIGKQVAANATKDKLKDKFGIEGEGDTTEEILKDAAQKKAKD CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH EINKQLQDGLKKLFN HHHHHHHHHHHHHCC >Mature Secondary Structure GRLLKILLITLFAIIVLLAIAVFVITQVIDPNEFKPEIEKQAQEQANLTLDIQGDLAWQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCEEEE FWPSLGVSLGRTEARIADDEELFAALDEASVSVAVLPLLYGQVEMDGITLAGLDVNLVDG ECHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHCEEEECCEEEECEEEEEECC PDGANWEQIGPQTPAEDTATEEEPAAEEDSTSLDIPLTIPKVVVSDGKVRYRNTADGTDI CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCCCEE IVEHFNLNAQDVNLDEPFPLQMSLRYQDQSDMRVDMNLDTVLAADIDNNHFVLNPMTLDA EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEEECCCCEEEEEEEEECC NIAGATTMPVDVHLEQNLDVNLNEDTVSIKDLLLQAAGTETKGNVDITALTGDMQLSGKL CCCCCEECEEEEEEECCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECCEE ATAPFDANKVLEAIGEAPIETTDSQALSNIALEATLGGEPGSVMASPLTVTLDDSTLRGS EECCCCHHHHHHHHCCCCCCCCCHHHHHHEEEEEEECCCCCCEEECCEEEEECCCCCCCC AGLASLESGKIVFDLTLDKITLDGYMPPASGETETAAPGGGKTGGTNSLSDAELIPVDTL CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC RPLRVDGKLAIGSLNYDGISASDMKFAVTANNGVLKLTQATGNTLGGSFSANGTLNVAGS CCEEECCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEECCCEEEECCC TPKISATNKISSVQIQPIAQMALDDDLAKGIFSMSGSYSANGNSEKALMNSAKGNIDLSL CCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEE ADATVRGLNLYDTLVGGVNDMLGQFQGLAAALIPNQESGKLPSPLSEDTKILDLKTKARL ECCEECCCCHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHH DKNVAYLDSLNATLSKGELSGSGWMNILNQDFDLKIGMQSPELGTSKYLQGTTWPLRCEG CCCCHHHHHCCCHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCHHHCCCCCCEEEECC NLGGSPAKWCGPDKDGFKDIGKQVAANATKDKLKDKFGIEGEGDTTEEILKDAAQKKAKD CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH EINKQLQDGLKKLFN HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA