| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834966
Identifier: 110834966
GI number: 110834966
Start: 2411581
End: 2412042
Strand: Direct
Name: 110834966
Synonym: ABO_2105
Alternate gene names: NA
Gene position: 2411581-2412042 (Clockwise)
Preceding gene: 110834965
Following gene: 110834968
Centisome position: 77.29
GC content: 54.55
Gene sequence:
>462_bases ATGAAGAAAGTGCTTTCCTTGTGGGTCGCCATGGGCCTGTTGATCCTGAGCGGCTGCCAGAGCCTCGCTGGCCTAGAGTC TCCAGAGGTTAGCGTCTCCGGTATTAATCTGAACAGCTTCAGCCTGTTTGAGCAGGAGTGGGGGCTGACGCTTCGGGTCC AAAACCCCAACGATCGGGAGCTAACGCTCAACAGCTTGGACTATGAGATCTACGTGAACGGGGAGAAGTTTGCCCGCGGG CTCACCAACGAAAGCATTACCTTGCCGGCCATGGGTGATACCAAAGTAACGACCGCCATCACCACAAGTCTGCTGGGCAG CCTGCAGCAATTACAGAAAATTCAGCAGAACCAAGACCAGCCACTGCAATACTGGCTAGTGGGCAAATCACGGGTGGCCG GGGTACCGATCCCTTTATCCTTCGACAAGGAAGGAGAAATGAAGCTACCCGCAATGCCATAA
Upstream 100 bases:
>100_bases CCGCGTTCATCTGCGCACGCCTTTCACCCCCACTCTCGCAACTTTCCGGTTATGCTGGTCTCTAACTGCCTGCTAACAAC GTATATCAATGGAGTGAAGA
Downstream 100 bases:
>100_bases AAAAAACGGGCTTATCTCCGCCGTCACAAAGCTCAACAAGCACAACAGCGCTGTTAAGAATGGCTGTCATGGTAGAACCC ATCATCCCTGCCGCTCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MKKVLSLWVAMGLLILSGCQSLAGLESPEVSVSGINLNSFSLFEQEWGLTLRVQNPNDRELTLNSLDYEIYVNGEKFARG LTNESITLPAMGDTKVTTAITTSLLGSLQQLQKIQQNQDQPLQYWLVGKSRVAGVPIPLSFDKEGEMKLPAMP
Sequences:
>Translated_153_residues MKKVLSLWVAMGLLILSGCQSLAGLESPEVSVSGINLNSFSLFEQEWGLTLRVQNPNDRELTLNSLDYEIYVNGEKFARG LTNESITLPAMGDTKVTTAITTSLLGSLQQLQKIQQNQDQPLQYWLVGKSRVAGVPIPLSFDKEGEMKLPAMP >Mature_153_residues MKKVLSLWVAMGLLILSGCQSLAGLESPEVSVSGINLNSFSLFEQEWGLTLRVQNPNDRELTLNSLDYEIYVNGEKFARG LTNESITLPAMGDTKVTTAITTSLLGSLQQLQKIQQNQDQPLQYWLVGKSRVAGVPIPLSFDKEGEMKLPAMP
Specific function: Unknown
COG id: COG5608
COG function: function code S; Conserved secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16841; Mature: 16841
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLSLWVAMGLLILSGCQSLAGLESPEVSVSGINLNSFSLFEQEWGLTLRVQNPNDRE CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCE LTLNSLDYEIYVNGEKFARGLTNESITLPAMGDTKVTTAITTSLLGSLQQLQKIQQNQDQ EEEECCCEEEEECHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC PLQYWLVGKSRVAGVPIPLSFDKEGEMKLPAMP CEEEEEECCCCCCCCCCCCCCCCCCCEECCCCC >Mature Secondary Structure MKKVLSLWVAMGLLILSGCQSLAGLESPEVSVSGINLNSFSLFEQEWGLTLRVQNPNDRE CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCE LTLNSLDYEIYVNGEKFARGLTNESITLPAMGDTKVTTAITTSLLGSLQQLQKIQQNQDQ EEEECCCEEEEECHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC PLQYWLVGKSRVAGVPIPLSFDKEGEMKLPAMP CEEEEEECCCCCCCCCCCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA