| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is gdhA [H]
Identifier: 110834960
GI number: 110834960
Start: 2405463
End: 2405657
Strand: Direct
Name: gdhA [H]
Synonym: ABO_2099
Alternate gene names: 110834960
Gene position: 2405463-2405657 (Clockwise)
Preceding gene: 110834958
Following gene: 110834961
Centisome position: 77.09
GC content: 51.28
Gene sequence:
>195_bases ATGACATCAGGGTTAGAGAGTTTTCTTCAGCAGATAAAACGGCGCGACCCGGAACAAGCCGCCTTCCACCAAGCCAGCGA AGAGGTTCTGCGCTCACTATGGCCATTCCTCAAACTGCAGCCAAAGTATCAATCCATGGGCCTACTGGAAAGGCTTGTTG AACCCGAGCGGGTGATTCAATTTAGAATCGCCTAG
Upstream 100 bases:
>100_bases GCCTAGCCCGAGACAAACAGTACCCCCTAAGCGCATCAAATTGGTGCGCCATAGCGCACCAATTAAAACCACTCACCACT CAGACGCTCAGGATTCCAAT
Downstream 100 bases:
>100_bases CAAGATGATAACGGTCAGGTCCAGTCAATCGTGGATATCGGGTACAGATGAACAGCGCCATCGGCCCCTACAAAGGCGGG CGACGCTTTCATCCATCGGT
Product: glutamate dehydrogenase, fragment
Products: NA
Alternate protein names: NADP-GDH [H]
Number of amino acids: Translated: 64; Mature: 63
Protein sequence:
>64_residues MTSGLESFLQQIKRRDPEQAAFHQASEEVLRSLWPFLKLQPKYQSMGLLERLVEPERVIQFRIA
Sequences:
>Translated_64_residues MTSGLESFLQQIKRRDPEQAAFHQASEEVLRSLWPFLKLQPKYQSMGLLERLVEPERVIQFRIA >Mature_63_residues TSGLESFLQQIKRRDPEQAAFHQASEEVLRSLWPFLKLQPKYQSMGLLERLVEPERVIQFRIA
Specific function: Unknown
COG id: COG0334
COG function: function code E; Glutamate dehydrogenase/leucine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Glu/Leu/Phe/Val dehydrogenases family [H]
Homologues:
Organism=Escherichia coli, GI1788059, Length=62, Percent_Identity=62.9032258064516, Blast_Score=89, Evalue=4e-20,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 9362 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006095 - InterPro: IPR006096 - InterPro: IPR006097 - InterPro: IPR014362 - InterPro: IPR016040 [H]
Pfam domain/function: PF00208 ELFV_dehydrog; PF02812 ELFV_dehydrog_N [H]
EC number: =1.4.1.4 [H]
Molecular weight: Translated: 7572; Mature: 7441
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSGLESFLQQIKRRDPEQAAFHQASEEVLRSLWPFLKLQPKYQSMGLLERLVEPERVIQ CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHH FRIA HCCC >Mature Secondary Structure TSGLESFLQQIKRRDPEQAAFHQASEEVLRSLWPFLKLQPKYQSMGLLERLVEPERVIQ CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHH FRIA HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6308576; 6373501; 9097039; 9278503; 9298646 [H]