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The map label for this gene is cydB [H]

Identifier: 110636389

GI number: 110636389

Start: 4373593

End: 4374597

Strand: Reverse

Name: cydB [H]

Synonym: Meso_4065

Alternate gene names: 110636389

Gene position: 4374597-4373593 (Counterclockwise)

Preceding gene: 110636390

Following gene: 110636383

Centisome position: 99.14

GC content: 60.5

Gene sequence:

>1005_bases
ATGGAATGGTATCTCCCTGCAATATGGGCAGGCCTCATCGGCACTGCCGTGGCAATGTATGTAATCCTCGATGGGTTCGA
CCTCGGCATCGGCATCCTCTTTCCTCTCACGCATGAGGAGGAGGAACGGGACCAGATGATGAATTCCGTCGCTCCCTTCT
GGGATGGCAACGAGACCTGGCTGGTGCTGGGCGGCGGCGGCCTTTGGGTGGCATTCCCGACAGCCTATTCGGTGATCATG
CCCGCGCTGTACCTGCCTGTAATGGGAATGCTCCTGGCTCTGGTGCTCCGCGGGGTGTCTTTTGAATTCCGGTGGGTTGC
AAAGCCAAGCCACCGGATGTGGGACATCGCCTTTGCAGGCGGCTCCATTATTGCCGCTTTTCTGCAGGGCGTGATCCTCG
GCGGACTGCTGCAAGGGATCCAAGTAGCGGACAGGCAATATGCCGGCGGTCCCCTGGATTGGCTGACGCCATTTGCCATC
TTCGTGGGTCTTGCCGTGGTCGCGGGATACGGTCTTCTAGGCTCAACCTGGCTGTTGATGCGCACGATCGGGCCAGTACA
GGAACTGGGACGCCGCTACGCGCCGATATTCCTCCTTGCCGTGCTGGCTGGGATGGGGATTGTAAGTCTCTGGACGCCGC
TTTTGATCGACCGGATCGCGGAAAGGTGGTTCAGCCTTCCAAACTTCTATGTCTTGTGGCCCGTACCGGTCGCGGCAGCC
CTGGTCGGCTATGGCATCTGGCGCTGGCTGGCCGAAGGGCGCGAGGGACTTCCCTTCTTTGGCGCGATCGTCCTTTTCCT
GCTCGGCTATGCCGGCCTTGTCATCTCCACCGTGCCCTATCTGGTGCCGCCGCACCTCACTTTCTGGGACACGGCAGCGG
TACCGGCTTCCCAGATCTTCCTGCTGATCGGGACGGTCTTTCTCCTGCCGCTCGTTTTCGGCTACACCATCTTCGTCTAC
TGGGTCTTCCGTGCCAAGGTCGGCCCTGGCGAGGGGTATCACTGA

Upstream 100 bases:

>100_bases
GCCCGCTCTCCGGCGCTGAGGAAGCCACGCGCGAAGCGACCGGGCGATCGCCGGGCGACGGCCCAGGCGCATCGCTCGCC
CCGCCGAAGGGATGACAGCG

Downstream 100 bases:

>100_bases
GCCGTGGCGGCGCTCATTGATCGCCGATCAGCAAGGACGCGCCGACGACGCCCAGGAAAACGAGACCGAAGCCGAAGACG
GTGACCAGAAGGTGATTGTG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MEWYLPAIWAGLIGTAVAMYVILDGFDLGIGILFPLTHEEEERDQMMNSVAPFWDGNETWLVLGGGGLWVAFPTAYSVIM
PALYLPVMGMLLALVLRGVSFEFRWVAKPSHRMWDIAFAGGSIIAAFLQGVILGGLLQGIQVADRQYAGGPLDWLTPFAI
FVGLAVVAGYGLLGSTWLLMRTIGPVQELGRRYAPIFLLAVLAGMGIVSLWTPLLIDRIAERWFSLPNFYVLWPVPVAAA
LVGYGIWRWLAEGREGLPFFGAIVLFLLGYAGLVISTVPYLVPPHLTFWDTAAVPASQIFLLIGTVFLLPLVFGYTIFVY
WVFRAKVGPGEGYH

Sequences:

>Translated_334_residues
MEWYLPAIWAGLIGTAVAMYVILDGFDLGIGILFPLTHEEEERDQMMNSVAPFWDGNETWLVLGGGGLWVAFPTAYSVIM
PALYLPVMGMLLALVLRGVSFEFRWVAKPSHRMWDIAFAGGSIIAAFLQGVILGGLLQGIQVADRQYAGGPLDWLTPFAI
FVGLAVVAGYGLLGSTWLLMRTIGPVQELGRRYAPIFLLAVLAGMGIVSLWTPLLIDRIAERWFSLPNFYVLWPVPVAAA
LVGYGIWRWLAEGREGLPFFGAIVLFLLGYAGLVISTVPYLVPPHLTFWDTAAVPASQIFLLIGTVFLLPLVFGYTIFVY
WVFRAKVGPGEGYH
>Mature_334_residues
MEWYLPAIWAGLIGTAVAMYVILDGFDLGIGILFPLTHEEEERDQMMNSVAPFWDGNETWLVLGGGGLWVAFPTAYSVIM
PALYLPVMGMLLALVLRGVSFEFRWVAKPSHRMWDIAFAGGSIIAAFLQGVILGGLLQGIQVADRQYAGGPLDWLTPFAI
FVGLAVVAGYGLLGSTWLLMRTIGPVQELGRRYAPIFLLAVLAGMGIVSLWTPLLIDRIAERWFSLPNFYVLWPVPVAAA
LVGYGIWRWLAEGREGLPFFGAIVLFLLGYAGLVISTVPYLVPPHLTFWDTAAVPASQIFLLIGTVFLLPLVFGYTIFVY
WVFRAKVGPGEGYH

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=27.7929155313352, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787213, Length=352, Percent_Identity=28.6931818181818, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36761; Mature: 36761

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWYLPAIWAGLIGTAVAMYVILDGFDLGIGILFPLTHEEEERDQMMNSVAPFWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCCCCCEE
LVLGGGGLWVAFPTAYSVIMPALYLPVMGMLLALVLRGVSFEFRWVAKPSHRMWDIAFAG
EEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECC
GSIIAAFLQGVILGGLLQGIQVADRQYAGGPLDWLTPFAIFVGLAVVAGYGLLGSTWLLM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RTIGPVQELGRRYAPIFLLAVLAGMGIVSLWTPLLIDRIAERWFSLPNFYVLWPVPVAAA
HHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
LVGYGIWRWLAEGREGLPFFGAIVLFLLGYAGLVISTVPYLVPPHLTFWDTAAVPASQIF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
LLIGTVFLLPLVFGYTIFVYWVFRAKVGPGEGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEWYLPAIWAGLIGTAVAMYVILDGFDLGIGILFPLTHEEEERDQMMNSVAPFWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCCCCCEE
LVLGGGGLWVAFPTAYSVIMPALYLPVMGMLLALVLRGVSFEFRWVAKPSHRMWDIAFAG
EEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECC
GSIIAAFLQGVILGGLLQGIQVADRQYAGGPLDWLTPFAIFVGLAVVAGYGLLGSTWLLM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RTIGPVQELGRRYAPIFLLAVLAGMGIVSLWTPLLIDRIAERWFSLPNFYVLWPVPVAAA
HHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
LVGYGIWRWLAEGREGLPFFGAIVLFLLGYAGLVISTVPYLVPPHLTFWDTAAVPASQIF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
LLIGTVFLLPLVFGYTIFVYWVFRAKVGPGEGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]