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The map label for this gene is cydA [H]

Identifier: 110636390

GI number: 110636390

Start: 4374603

End: 4376039

Strand: Reverse

Name: cydA [H]

Synonym: Meso_4066

Alternate gene names: 110636390

Gene position: 4376039-4374603 (Counterclockwise)

Preceding gene: 110636394

Following gene: 110636389

Centisome position: 99.17

GC content: 60.68

Gene sequence:

>1437_bases
ATGGAATTCGATCCAGTCCTGCTCGCGCGCATACAATTTGCCTTCACCGTTTCCTTCCACATCATCTTCCCCGCTTTTTC
AATCGGCCTGTCTGCCTTCATCGCCGTGTTGCTGCTCGCATGGAGGTGGACGAAGAAGGAGAATTTCCACCGCCTCGCGC
GCTTCTGGACAAAGATCCTCGCCGTTTCCTTCGCCATGGGCGTCGTGTCCGGCATTGTGCTCAGCTATCAGTTCGGAACG
AACTGGAGCCGCTTTTCTGAATTCAGCGGCAATGTGATCGGCCCGCTGATCGGCTACGAGGTGCTGACGGCGTTTTATCT
GGAAGCGACATTCCTCGGCATTCTCCTGTTCGGCTGGAACCGGTTTCCCGCCTGGCTCATCACTCTTGCAGCCTGCCTCG
TTGCTATCGGAACGTCCATCAGCGCATTCTGGATTCTCTCGGCCAACAGCTGGATGCAAACCCCCGCCGGCCATGAAATT
CGCAATGGGATCGCCTATCCCGTCGACTGGCTCCAGATCATCTTCAACCCGAGCTTCCCCTATCGCTTCGCGCATATGGT
GAATGCCGCCTATCTCGCGACAGCGGTCGTGGTGCTTGCGGTCGGCGCACGATATCTGCTCGCGGGACGGTATTCCGAAG
AAAGCCGCACCATGCTCAGGATTGCGGTCGGCATGATTGCGGTCTCGGCAACCCTCCAGCTTGTCATCGGCGACCAGCAC
GGGCTCAACACCCTTGAGCACCAGCCGGCGAAGGTGGCGGCCATGGAAGGGCATTGGAGCGGACAGGATCCCGCGGCACT
GGTCCTTTTCGGCATCCCTGACAAGGAGGCGCGAAAGAACCATCTTGAGATCGCCATTCCCAATCTCGGCTCGCTCATCC
TCACCCATGACTGGAATGGGACTTATCCAGGAATGACCGATTTCCCCGAGGACCAATGGCCGCCGGTAGCCAAGATGTTC
TTCGCCTTCCGCATCATGGTGGGAATAGGGCTTCTCCTGATCGCGGTCGGCTTCTGTGGCCTTTATCTCTGGTGGCGGGG
ACGGCTATTCGAAAACCGGCTCTACCTGCGAGCCACCTCCTATATGTGGCCACTTGGCTTCATCGCCATCCTGGCCGGTT
GGTTCGTCACGGAGCAGGGACGGCAGCCCTGGCTCGTCTACGGCCACCTGCGCACCGCGGCCGGCGTTTCGCCTGTACCA
GGTGCAAGCGTGGCGAGTACGCTCGCCCTGTTCGTCTTCATCTATGGGATCGTGTTCGCCACCGGCATTTACTACATCAA
CCGGCTGATCAATGCGGGTCCAAAGGGCCAGGCGACCGAGGCCGCCGCAGGTGTGCCGAACGGCCCGCTCTCCGGCGCTG
AGGAAGCCACGCGCGAAGCGACCGGGCGATCGCCGGGCGACGGCCCAGGCGCATCGCTCGCCCCGCCGAAGGGATGA

Upstream 100 bases:

>100_bases
GCCTGCGCCAACAGATCCGCCCAGAGCGGACATCGCTGTCGTCTGCTCCATCATTATCAAATTTGGTTGCCGGACGGGCA
CCCGTGGTGGAGAGAACTTA

Downstream 100 bases:

>100_bases
CAGCGATGGAATGGTATCTCCCTGCAATATGGGCAGGCCTCATCGGCACTGCCGTGGCAATGTATGTAATCCTCGATGGG
TTCGACCTCGGCATCGGCAT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MEFDPVLLARIQFAFTVSFHIIFPAFSIGLSAFIAVLLLAWRWTKKENFHRLARFWTKILAVSFAMGVVSGIVLSYQFGT
NWSRFSEFSGNVIGPLIGYEVLTAFYLEATFLGILLFGWNRFPAWLITLAACLVAIGTSISAFWILSANSWMQTPAGHEI
RNGIAYPVDWLQIIFNPSFPYRFAHMVNAAYLATAVVVLAVGARYLLAGRYSEESRTMLRIAVGMIAVSATLQLVIGDQH
GLNTLEHQPAKVAAMEGHWSGQDPAALVLFGIPDKEARKNHLEIAIPNLGSLILTHDWNGTYPGMTDFPEDQWPPVAKMF
FAFRIMVGIGLLLIAVGFCGLYLWWRGRLFENRLYLRATSYMWPLGFIAILAGWFVTEQGRQPWLVYGHLRTAAGVSPVP
GASVASTLALFVFIYGIVFATGIYYINRLINAGPKGQATEAAAGVPNGPLSGAEEATREATGRSPGDGPGASLAPPKG

Sequences:

>Translated_478_residues
MEFDPVLLARIQFAFTVSFHIIFPAFSIGLSAFIAVLLLAWRWTKKENFHRLARFWTKILAVSFAMGVVSGIVLSYQFGT
NWSRFSEFSGNVIGPLIGYEVLTAFYLEATFLGILLFGWNRFPAWLITLAACLVAIGTSISAFWILSANSWMQTPAGHEI
RNGIAYPVDWLQIIFNPSFPYRFAHMVNAAYLATAVVVLAVGARYLLAGRYSEESRTMLRIAVGMIAVSATLQLVIGDQH
GLNTLEHQPAKVAAMEGHWSGQDPAALVLFGIPDKEARKNHLEIAIPNLGSLILTHDWNGTYPGMTDFPEDQWPPVAKMF
FAFRIMVGIGLLLIAVGFCGLYLWWRGRLFENRLYLRATSYMWPLGFIAILAGWFVTEQGRQPWLVYGHLRTAAGVSPVP
GASVASTLALFVFIYGIVFATGIYYINRLINAGPKGQATEAAAGVPNGPLSGAEEATREATGRSPGDGPGASLAPPKG
>Mature_478_residues
MEFDPVLLARIQFAFTVSFHIIFPAFSIGLSAFIAVLLLAWRWTKKENFHRLARFWTKILAVSFAMGVVSGIVLSYQFGT
NWSRFSEFSGNVIGPLIGYEVLTAFYLEATFLGILLFGWNRFPAWLITLAACLVAIGTSISAFWILSANSWMQTPAGHEI
RNGIAYPVDWLQIIFNPSFPYRFAHMVNAAYLATAVVVLAVGARYLLAGRYSEESRTMLRIAVGMIAVSATLQLVIGDQH
GLNTLEHQPAKVAAMEGHWSGQDPAALVLFGIPDKEARKNHLEIAIPNLGSLILTHDWNGTYPGMTDFPEDQWPPVAKMF
FAFRIMVGIGLLLIAVGFCGLYLWWRGRLFENRLYLRATSYMWPLGFIAILAGWFVTEQGRQPWLVYGHLRTAAGVSPVP
GASVASTLALFVFIYGIVFATGIYYINRLINAGPKGQATEAAAGVPNGPLSGAEEATREATGRSPGDGPGASLAPPKG

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=30.8300395256917, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1787212, Length=333, Percent_Identity=34.2342342342342, Blast_Score=204, Evalue=7e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52419; Mature: 52419

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFDPVLLARIQFAFTVSFHIIFPAFSIGLSAFIAVLLLAWRWTKKENFHRLARFWTKIL
CCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AVSFAMGVVSGIVLSYQFGTNWSRFSEFSGNVIGPLIGYEVLTAFYLEATFLGILLFGWN
HHHHHHHHHHHHHEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RFPAWLITLAACLVAIGTSISAFWILSANSWMQTPAGHEIRNGIAYPVDWLQIIFNPSFP
CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCC
YRFAHMVNAAYLATAVVVLAVGARYLLAGRYSEESRTMLRIAVGMIAVSATLQLVIGDQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCC
GLNTLEHQPAKVAAMEGHWSGQDPAALVLFGIPDKEARKNHLEIAIPNLGSLILTHDWNG
CCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCCHHHCCCCEEEEECCCCCEEEEECCCC
TYPGMTDFPEDQWPPVAKMFFAFRIMVGIGLLLIAVGFCGLYLWWRGRLFENRLYLRATS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEC
YMWPLGFIAILAGWFVTEQGRQPWLVYGHLRTAAGVSPVPGASVASTLALFVFIYGIVFA
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TGIYYINRLINAGPKGQATEAAAGVPNGPLSGAEEATREATGRSPGDGPGASLAPPKG
HHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFDPVLLARIQFAFTVSFHIIFPAFSIGLSAFIAVLLLAWRWTKKENFHRLARFWTKIL
CCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AVSFAMGVVSGIVLSYQFGTNWSRFSEFSGNVIGPLIGYEVLTAFYLEATFLGILLFGWN
HHHHHHHHHHHHHEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RFPAWLITLAACLVAIGTSISAFWILSANSWMQTPAGHEIRNGIAYPVDWLQIIFNPSFP
CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCC
YRFAHMVNAAYLATAVVVLAVGARYLLAGRYSEESRTMLRIAVGMIAVSATLQLVIGDQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCC
GLNTLEHQPAKVAAMEGHWSGQDPAALVLFGIPDKEARKNHLEIAIPNLGSLILTHDWNG
CCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCCHHHCCCCEEEEECCCCCEEEEECCCC
TYPGMTDFPEDQWPPVAKMFFAFRIMVGIGLLLIAVGFCGLYLWWRGRLFENRLYLRATS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEC
YMWPLGFIAILAGWFVTEQGRQPWLVYGHLRTAAGVSPVPGASVASTLALFVFIYGIVFA
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TGIYYINRLINAGPKGQATEAAAGVPNGPLSGAEEATREATGRSPGDGPGASLAPPKG
HHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]