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The map label for this gene is yagI [H]

Identifier: 110632769

GI number: 110632769

Start: 453511

End: 454266

Strand: Reverse

Name: yagI [H]

Synonym: Meso_0408

Alternate gene names: 110632769

Gene position: 454266-453511 (Counterclockwise)

Preceding gene: 110632770

Following gene: 110632764

Centisome position: 10.3

GC content: 64.42

Gene sequence:

>756_bases
ATGGATGTGACCACAGATGCAGGTCCGGCCGAGTTCCAGGCTGCTCCCGTGCGCTCCCTGTCCAAGGGACTGGCCGCGCT
CGACATTCTTCGTGGGGAGGGGGAGTTGCGCACCACCGATCTGGCGGCGCGCCTTTCCATCGACAAGGGCGTAGCGTCCC
GCATCCTGCAGACGCTTGCGCAGACAGGTTACGCCGAGCGCATGCCGGGGCGCCGTTACCGCATCGGCCCAAAGCTTGCG
GCGCAGGAGCACGCCGTTCTGTCCGTCGGTATCAGGGCGAGCGCTCGCCCGCTGCTCGCGCGCCTCTCCGAACAGGTCCA
GGAAGCAGTCTATCTGGGAGTCCTCGTCGACGGGCAAGTGCTTTATCTGGACAAGGAAGTGCCTGCGAGCGAACTGAAGG
TGGACCGGCCCATTCCCACGCTGGCTCCCTTGTACTGTACGGCCATCGGCAAGCTGTTTGTCGCGATGCATGGAATATCC
GTGCCGAGGGAACTGCCTGCCTATACGCCGAGGACGATTGCCGACCCGGCGCTCTATGCCACTGAGATCGCAGCTATAGC
GGAGAGAGGCTATGCCTGGGACGATGAGGAGTTCCATCTTGGCGTGCGTTGTGTCGCTGCGCCTCTCCGCGACCGCGGGG
GCAAGGTGCTGGGCGCCTTGAGCGTAGCCGCCCCGAGCGTTCGGCTTGCAAGCGAAGATATCGAAGCGGCGGCGAGAATC
ACCAAGAATGTCGCCGACGCCTTCACGGCGCCGTAG

Upstream 100 bases:

>100_bases
GTTATTGATGAGCGGGAGAATGGGTATTGTCAGCGGGCAGCCTCATCTGCGAAATGAAACCGTAAGGCGCGGAGAAGTGA
ACCCTCGGGGACCAAGTGCG

Downstream 100 bases:

>100_bases
ATCCCGCGGCCAGGGCTTGAACGATCTTCTCGATCATCCGGTTCCGGCGCGCCGCATCGTGCCAGCGGATGACCAGCACC
AGATCCTCGTCGGGATCCAC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDVTTDAGPAEFQAAPVRSLSKGLAALDILRGEGELRTTDLAARLSIDKGVASRILQTLAQTGYAERMPGRRYRIGPKLA
AQEHAVLSVGIRASARPLLARLSEQVQEAVYLGVLVDGQVLYLDKEVPASELKVDRPIPTLAPLYCTAIGKLFVAMHGIS
VPRELPAYTPRTIADPALYATEIAAIAERGYAWDDEEFHLGVRCVAAPLRDRGGKVLGALSVAAPSVRLASEDIEAAARI
TKNVADAFTAP

Sequences:

>Translated_251_residues
MDVTTDAGPAEFQAAPVRSLSKGLAALDILRGEGELRTTDLAARLSIDKGVASRILQTLAQTGYAERMPGRRYRIGPKLA
AQEHAVLSVGIRASARPLLARLSEQVQEAVYLGVLVDGQVLYLDKEVPASELKVDRPIPTLAPLYCTAIGKLFVAMHGIS
VPRELPAYTPRTIADPALYATEIAAIAERGYAWDDEEFHLGVRCVAAPLRDRGGKVLGALSVAAPSVRLASEDIEAAARI
TKNVADAFTAP
>Mature_251_residues
MDVTTDAGPAEFQAAPVRSLSKGLAALDILRGEGELRTTDLAARLSIDKGVASRILQTLAQTGYAERMPGRRYRIGPKLA
AQEHAVLSVGIRASARPLLARLSEQVQEAVYLGVLVDGQVLYLDKEVPASELKVDRPIPTLAPLYCTAIGKLFVAMHGIS
VPRELPAYTPRTIADPALYATEIAAIAERGYAWDDEEFHLGVRCVAAPLRDRGGKVLGALSVAAPSVRLASEDIEAAARI
TKNVADAFTAP

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=223, Percent_Identity=31.390134529148, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788131, Length=235, Percent_Identity=30.2127659574468, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082359, Length=239, Percent_Identity=28.4518828451883, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789999, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788581, Length=228, Percent_Identity=23.6842105263158, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786715, Length=253, Percent_Identity=25.296442687747, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 26764; Mature: 26764

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTTDAGPAEFQAAPVRSLSKGLAALDILRGEGELRTTDLAARLSIDKGVASRILQTLA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
QTGYAERMPGRRYRIGPKLAAQEHAVLSVGIRASARPLLARLSEQVQEAVYLGVLVDGQV
HCCCHHHCCCCEEECCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCEE
LYLDKEVPASELKVDRPIPTLAPLYCTAIGKLFVAMHGISVPRELPAYTPRTIADPALYA
EEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
TEIAAIAERGYAWDDEEFHLGVRCVAAPLRDRGGKVLGALSVAAPSVRLASEDIEAAARI
HHHHHHHHCCCCCCCCCHHHHHHHEEHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHHHH
TKNVADAFTAP
HHHHHHHHCCC
>Mature Secondary Structure
MDVTTDAGPAEFQAAPVRSLSKGLAALDILRGEGELRTTDLAARLSIDKGVASRILQTLA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
QTGYAERMPGRRYRIGPKLAAQEHAVLSVGIRASARPLLARLSEQVQEAVYLGVLVDGQV
HCCCHHHCCCCEEECCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCEE
LYLDKEVPASELKVDRPIPTLAPLYCTAIGKLFVAMHGISVPRELPAYTPRTIADPALYA
EEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
TEIAAIAERGYAWDDEEFHLGVRCVAAPLRDRGGKVLGALSVAAPSVRLASEDIEAAARI
HHHHHHHHCCCCCCCCCHHHHHHHEEHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHHHH
TKNVADAFTAP
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]