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The map label for this gene is dppB [H]

Identifier: 110632763

GI number: 110632763

Start: 444456

End: 445490

Strand: Reverse

Name: dppB [H]

Synonym: Meso_0402

Alternate gene names: 110632763

Gene position: 445490-444456 (Counterclockwise)

Preceding gene: 110632764

Following gene: 110632762

Centisome position: 10.1

GC content: 59.23

Gene sequence:

>1035_bases
ATGTTGTCTATCCTGCGCAGGTATCGCTTTATCGCCGGTCGGTCGGGCCACGCGATCGTGGTGCTGACAGGCGTCTCCAT
ACTTGTGTTTGTATTGGCTCGTGCCATTCCGGGGGACCCGGCACGGCTGGCGCTCGGCCCTTCCGCTTCAAGCGAGCAGG
TCGCCCAGTTGCGGCTGGACATGGGTCTCGATGAGCCATTGCTCATCCAATACTATAACTTTGTAACCAACGCCCTTCGC
CTCGATTTCGGTGTGTCTATTTTCACAAACCGGGCAGTCAGTTCAGACCTGGCGGCAACGTTGCCTGCCACGGTCGAACT
GGTCTTGGTGGCCGGTCTGATCATGATCATCGGAGGGCTGTGGCTTGGTGCGGTCAGCGCACGCTATCGTGACCGCTGGC
CCGACAATCTTTCGCGAATGGCCGCCCTTTGCTCCGTGGCAATGCCAAACTTCGTCTGGGCCATTCTTCTGATGCTGGTG
TTTTCCTACTGGCTGGATCTCCTGCCGGCAATCGGTCAGCTCAGCACCGGGGTGCCCAAGCCGCCGCCAATTACGGGACT
GCTGATCGTCGATGCGATGCTGCGCGGACAATGGTCGGTCGCCGGCGATGCACTGTCGCACATAATCCTTCCAGCCTTCG
CACTGTCCCTGCCCGGCTTGGCGCAGACGATCCGCCTGACAAGGACGAACATGATCAATACTTATTCCAGGCCGTTTATC
GAGTTCGCGAGAGCATACGGGTTTTCCGAGCGGCAGATCGCATATCGCTGGGCGATGCGGCCTTCGCTTGTGCCGACGCT
GACCCTCGTGGGGATGAACATCGCCGTCCTTCTCGGCAACGCCTTTCTCGTCGAAACGGTTTTCGGGTGGCCGGGCATGG
CAAAATACGGGGTCGAGGCGGTTTTGCGCAAGGATCTCAATGCTGTGGCGGCCGTCGTGCTGGTGATTTGCCTGGCTTTC
ATCCTCATCAACGCGCTGGTCGATGCCGTGATCATCTACGTGAACCCGAAACTGCGGGCGCGGAGATCCAAATGA

Upstream 100 bases:

>100_bases
ATGATGGACATTTCTCGCGCCTGATTCATCAAGCACCGCGTCGGGCGCCCGCAATCGTGCGCCCGCTAGCGGTTAGTAAG
AACTCCGGAAGTTCTCATCC

Downstream 100 bases:

>100_bases
CGACTCGCCTCGCCATCCCCATTGCCCTGCGCCGGTATTCGCGCAATCCCGCCTCCCTTATCGGCGCTGCAACGGTTCTC
GTCGTTGTCGTGGCCGCAGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MLSILRRYRFIAGRSGHAIVVLTGVSILVFVLARAIPGDPARLALGPSASSEQVAQLRLDMGLDEPLLIQYYNFVTNALR
LDFGVSIFTNRAVSSDLAATLPATVELVLVAGLIMIIGGLWLGAVSARYRDRWPDNLSRMAALCSVAMPNFVWAILLMLV
FSYWLDLLPAIGQLSTGVPKPPPITGLLIVDAMLRGQWSVAGDALSHIILPAFALSLPGLAQTIRLTRTNMINTYSRPFI
EFARAYGFSERQIAYRWAMRPSLVPTLTLVGMNIAVLLGNAFLVETVFGWPGMAKYGVEAVLRKDLNAVAAVVLVICLAF
ILINALVDAVIIYVNPKLRARRSK

Sequences:

>Translated_344_residues
MLSILRRYRFIAGRSGHAIVVLTGVSILVFVLARAIPGDPARLALGPSASSEQVAQLRLDMGLDEPLLIQYYNFVTNALR
LDFGVSIFTNRAVSSDLAATLPATVELVLVAGLIMIIGGLWLGAVSARYRDRWPDNLSRMAALCSVAMPNFVWAILLMLV
FSYWLDLLPAIGQLSTGVPKPPPITGLLIVDAMLRGQWSVAGDALSHIILPAFALSLPGLAQTIRLTRTNMINTYSRPFI
EFARAYGFSERQIAYRWAMRPSLVPTLTLVGMNIAVLLGNAFLVETVFGWPGMAKYGVEAVLRKDLNAVAAVVLVICLAF
ILINALVDAVIIYVNPKLRARRSK
>Mature_344_residues
MLSILRRYRFIAGRSGHAIVVLTGVSILVFVLARAIPGDPARLALGPSASSEQVAQLRLDMGLDEPLLIQYYNFVTNALR
LDFGVSIFTNRAVSSDLAATLPATVELVLVAGLIMIIGGLWLGAVSARYRDRWPDNLSRMAALCSVAMPNFVWAILLMLV
FSYWLDLLPAIGQLSTGVPKPPPITGLLIVDAMLRGQWSVAGDALSHIILPAFALSLPGLAQTIRLTRTNMINTYSRPFI
EFARAYGFSERQIAYRWAMRPSLVPTLTLVGMNIAVLLGNAFLVETVFGWPGMAKYGVEAVLRKDLNAVAAVVLVICLAF
ILINALVDAVIIYVNPKLRARRSK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=32.4921135646688, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787761, Length=336, Percent_Identity=35.7142857142857, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=31.7507418397626, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=32.8358208955224, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=28.7425149700599, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787550, Length=261, Percent_Identity=31.0344827586207, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788504, Length=298, Percent_Identity=25.503355704698, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37519; Mature: 37519

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSILRRYRFIAGRSGHAIVVLTGVSILVFVLARAIPGDPARLALGPSASSEQVAQLRLD
CHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
MGLDEPLLIQYYNFVTNALRLDFGVSIFTNRAVSSDLAATLPATVELVLVAGLIMIIGGL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGAVSARYRDRWPDNLSRMAALCSVAMPNFVWAILLMLVFSYWLDLLPAIGQLSTGVPK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPPITGLLIVDAMLRGQWSVAGDALSHIILPAFALSLPGLAQTIRLTRTNMINTYSRPFI
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EFARAYGFSERQIAYRWAMRPSLVPTLTLVGMNIAVLLGNAFLVETVFGWPGMAKYGVEA
HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
VLRKDLNAVAAVVLVICLAFILINALVDAVIIYVNPKLRARRSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHCCCCC
>Mature Secondary Structure
MLSILRRYRFIAGRSGHAIVVLTGVSILVFVLARAIPGDPARLALGPSASSEQVAQLRLD
CHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
MGLDEPLLIQYYNFVTNALRLDFGVSIFTNRAVSSDLAATLPATVELVLVAGLIMIIGGL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGAVSARYRDRWPDNLSRMAALCSVAMPNFVWAILLMLVFSYWLDLLPAIGQLSTGVPK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPPITGLLIVDAMLRGQWSVAGDALSHIILPAFALSLPGLAQTIRLTRTNMINTYSRPFI
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EFARAYGFSERQIAYRWAMRPSLVPTLTLVGMNIAVLLGNAFLVETVFGWPGMAKYGVEA
HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
VLRKDLNAVAAVVLVICLAFILINALVDAVIIYVNPKLRARRSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]