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The map label for this gene is yhgF [H]

Identifier: 110632678

GI number: 110632678

Start: 352289

End: 354607

Strand: Reverse

Name: yhgF [H]

Synonym: Meso_0317

Alternate gene names: 110632678

Gene position: 354607-352289 (Counterclockwise)

Preceding gene: 110632679

Following gene: 110632676

Centisome position: 8.04

GC content: 64.34

Gene sequence:

>2319_bases
ATGGCTACAGACATCAATCGTATCGCTTCCCTCATCGCAGCCGAGATCGTGGCCAGGGCCGAGCAGGCCCAGGCGGCGAT
TGCATTGCTGGACGAGGGGGCGACCGTTCCCTTCATCGCGCGCTACCGTAAGGAAGTGACCGGGGGGCTGGACGATACCC
AGTTGCGCCTGCTGTCCGAGCGCCTGACCTATCTGCGCGAGTTTGACCAGCGGCGCGAGGCGATCCTCTCCTCGATTCGG
GAGCAAGGCAAGCTTACGCCCGAACTGGAAGCAAAGATCGCGGCCGCCAGCACCAAGGCCGAACTGGAGGACATTTATCT
TCCCTACAAGCCCAAGCGCCGCACCAAGGCGGAAATCGCGCGGGAGCGCGGGCTTGGGCCGCTTGCCGAAGCGATCCTGG
CGGATCGAGCCGCTGTGCCACGAGAATTGGCGCAAGCCTACGTCACGGATGAGGTGCCGGATGTGAAGGCAGCCGTTGAA
GGCGCGCGCGATATCCTTGCAGAGCAGTTTTCGGAGAACGCCGACCTTGTCGGCCGGCTTCGTACATATATGAAGGAGAA
AGCCTTCCTGCGCTCACGCGTGGTGGAGGGCAAGGAAGAGGCCGGCGCGAAATTCTCCGACTATTTCGACCATGTGGAGC
GCTGGGCGGGCGTGCCCAGCCACCGGGCACTGGCCATGCTTCGCGGGCGAAACGAGGATGTGCTTTCGCTCGATATCGAA
GTCGACGCCGACGACCCCTCGCCGGTAAAGCCGGTCGTTCGCATGGTCGCCGCTGCCTACCGGATCGGCGACGCGCTTCC
GGGCGACCGGTGGCTTATGGAAGTCGCGGGCTGGACCTGGCGCGTGAAGCTTTCATTGCATCTGTCGCTCGACCTCATGC
GGGACCTGCGGGAGAGGTCGGAAGAAGAGGCAATTCACGTCTTCGCTCGCAATCTGAAAGACCTGCTGCTTGCTGCGCCC
GCAGGCTCGCGTCCGACCATGGGGCTCGATCCGGGTATCCGCACGGGTGTCAAGGTCGCCGTCGTTGACGGTACGGGAAA
GCTGGTGGCGACCACGACCGTCTACCCGTTCCCGCCCCGCAATGATGTGCGGGGCGCGCAAACCGAACTCGCCGCCCTCA
TTCGCAAGCATCAGGTCGAACTCATTGCCATCGGCAACGGCACCGCCAGCCGGGAAACGGACAAGCTGGTTGCGGACATG
CTCTCCGACATGCCGCCGCCCAAGCCCATCAAGGTGGTGGTCTCCGAAGCGGGCGCTTCCGTCTATTCCGCTTCCGAGAC
CGCCGCGGCGGAATTCCCGGAGCTCGACGTGTCACTGCGCGGCGCCGTATCGATCGCCCGCCGATTACAGGATCCCCTCG
CCGAACTCGTCAAGATCGAGCCGAAATCGATCGGTGTCGGGCAATACCAGCACGATGTCGACCAATACCGGCTGGCACGC
TCGCTCGACGCGGTGGTGGAGGATGCGGTGAATGCCGTTGGCGTCGACCTCAACACAGCCTCTGCGTCCCTGCTTGCCCG
CGTCTCGGGCCTTGGCGCTTCCCTCGCAGAAGCCATCGTCGCGCACCGCAACATCAACGGCCCGTATGCAAGCCGCCAGG
ATCTGCTCAAGGTGGCGCGACTTGGACAACGCACCTTCGAGCAATGCGCGGGCTTCCTGCGCATCACCAATGGAACCGAA
CCGCTGGACGCTTCCGCCGTGCACCCGGAGGCTTATCATCTGGCGCGCAGGATCGTTGCCGCCTGCGGCCGGGACGTGCG
TTCACTCATGGGCGATAGCGGCGCATTGAAAGCACTCGATCCGCGCGTTTTCGCAGACGAGCGCTTCGGGCTTCCTACCG
TCCGCGACATCATCGCAGAGCTGGAAAAGCCCGGCCGCGACCCGCGGCCGGCCTTCCGCACCGCGACCTTCGCCGACGGC
ATCGACGACATCAAGGATCTCAAGCCCGGCATGATGCTGGAAGGCACCGTTACGAATGTTGCGGCCTTCGGCGCTTTTGT
CGATATCGGCGTGCATCAGGACGGGCTGGTGCATGTTTCGCAGCTCGCAAACCGCTTTGTTAAGGACGCGCATGAGGTGG
TGAAGGCGGGTGATGTGGTGAAGGTCCGCGTCCTTGAGGTCGACATCAAGCGCAACCGCATCAGCCTTTCCATGCGCAGC
GACGGGGATGCAGGTTCCAGGCCGCAACAGCCGCGCGAGAGCGGCAAGCCCCTCCGCAATTCCCAACCGGGCAACGACCG
CGGCGGAACGCGCGGGCAAAGCGGGCCGGCTCAGGGCGCTCTCGGCGCGGCACTCGCGGAAGCGTTCAAGCGCAGGTGA

Upstream 100 bases:

>100_bases
GGTCGCGGGAGGTGCGGTGCTGATTTGTGGATAAGCATCGCTGGCCCGGTCAACGGAATATCACTATGTTCCCGACCCGT
TCATCGATTCTGGAACTGGC

Downstream 100 bases:

>100_bases
CGTTTCTCGTGGCTGGAGGCTTTCGCGCGCAACCTCTGCCAGCGGCAAATGGCGCACTCAGCTTGCGCCACTTTGCTTTC
TTAAAAGCTCAGCGGCCGCC

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MATDINRIASLIAAEIVARAEQAQAAIALLDEGATVPFIARYRKEVTGGLDDTQLRLLSERLTYLREFDQRREAILSSIR
EQGKLTPELEAKIAAASTKAELEDIYLPYKPKRRTKAEIARERGLGPLAEAILADRAAVPRELAQAYVTDEVPDVKAAVE
GARDILAEQFSENADLVGRLRTYMKEKAFLRSRVVEGKEEAGAKFSDYFDHVERWAGVPSHRALAMLRGRNEDVLSLDIE
VDADDPSPVKPVVRMVAAAYRIGDALPGDRWLMEVAGWTWRVKLSLHLSLDLMRDLRERSEEEAIHVFARNLKDLLLAAP
AGSRPTMGLDPGIRTGVKVAVVDGTGKLVATTTVYPFPPRNDVRGAQTELAALIRKHQVELIAIGNGTASRETDKLVADM
LSDMPPPKPIKVVVSEAGASVYSASETAAAEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQYRLAR
SLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNINGPYASRQDLLKVARLGQRTFEQCAGFLRITNGTE
PLDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTATFADG
IDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRS
DGDAGSRPQQPRESGKPLRNSQPGNDRGGTRGQSGPAQGALGAALAEAFKRR

Sequences:

>Translated_772_residues
MATDINRIASLIAAEIVARAEQAQAAIALLDEGATVPFIARYRKEVTGGLDDTQLRLLSERLTYLREFDQRREAILSSIR
EQGKLTPELEAKIAAASTKAELEDIYLPYKPKRRTKAEIARERGLGPLAEAILADRAAVPRELAQAYVTDEVPDVKAAVE
GARDILAEQFSENADLVGRLRTYMKEKAFLRSRVVEGKEEAGAKFSDYFDHVERWAGVPSHRALAMLRGRNEDVLSLDIE
VDADDPSPVKPVVRMVAAAYRIGDALPGDRWLMEVAGWTWRVKLSLHLSLDLMRDLRERSEEEAIHVFARNLKDLLLAAP
AGSRPTMGLDPGIRTGVKVAVVDGTGKLVATTTVYPFPPRNDVRGAQTELAALIRKHQVELIAIGNGTASRETDKLVADM
LSDMPPPKPIKVVVSEAGASVYSASETAAAEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQYRLAR
SLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNINGPYASRQDLLKVARLGQRTFEQCAGFLRITNGTE
PLDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTATFADG
IDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRS
DGDAGSRPQQPRESGKPLRNSQPGNDRGGTRGQSGPAQGALGAALAEAFKRR
>Mature_771_residues
ATDINRIASLIAAEIVARAEQAQAAIALLDEGATVPFIARYRKEVTGGLDDTQLRLLSERLTYLREFDQRREAILSSIRE
QGKLTPELEAKIAAASTKAELEDIYLPYKPKRRTKAEIARERGLGPLAEAILADRAAVPRELAQAYVTDEVPDVKAAVEG
ARDILAEQFSENADLVGRLRTYMKEKAFLRSRVVEGKEEAGAKFSDYFDHVERWAGVPSHRALAMLRGRNEDVLSLDIEV
DADDPSPVKPVVRMVAAAYRIGDALPGDRWLMEVAGWTWRVKLSLHLSLDLMRDLRERSEEEAIHVFARNLKDLLLAAPA
GSRPTMGLDPGIRTGVKVAVVDGTGKLVATTTVYPFPPRNDVRGAQTELAALIRKHQVELIAIGNGTASRETDKLVADML
SDMPPPKPIKVVVSEAGASVYSASETAAAEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQYRLARS
LDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNINGPYASRQDLLKVARLGQRTFEQCAGFLRITNGTEP
LDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTATFADGI
DDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRSD
GDAGSRPQQPRESGKPLRNSQPGNDRGGTRGQSGPAQGALGAALAEAFKRR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=32.2335025380711, Blast_Score=339, Evalue=5e-93,
Organism=Homo sapiens, GI27597090, Length=732, Percent_Identity=24.0437158469945, Blast_Score=106, Evalue=1e-22,
Organism=Escherichia coli, GI87082262, Length=756, Percent_Identity=60.8465608465608, Blast_Score=874, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=80, Percent_Identity=40, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=731, Percent_Identity=29.4117647058824, Blast_Score=253, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17552892, Length=339, Percent_Identity=30.9734513274336, Blast_Score=101, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321552, Length=191, Percent_Identity=30.3664921465969, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI62484314, Length=766, Percent_Identity=31.5926892950392, Blast_Score=360, Evalue=2e-99,
Organism=Drosophila melanogaster, GI24640080, Length=452, Percent_Identity=22.5663716814159, Blast_Score=89, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83789; Mature: 83658

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDINRIASLIAAEIVARAEQAQAAIALLDEGATVPFIARYRKEVTGGLDDTQLRLLSE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLTYLREFDQRREAILSSIREQGKLTPELEAKIAAASTKAELEDIYLPYKPKRRTKAEIA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
RERGLGPLAEAILADRAAVPRELAQAYVTDEVPDVKAAVEGARDILAEQFSENADLVGRL
HHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
RTYMKEKAFLRSRVVEGKEEAGAKFSDYFDHVERWAGVPSHRALAMLRGRNEDVLSLDIE
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEE
VDADDPSPVKPVVRMVAAAYRIGDALPGDRWLMEVAGWTWRVKLSLHLSLDLMRDLRERS
ECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHH
EEEAIHVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAVVDGTGKLVATTTVYPFPPR
HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCC
NDVRGAQTELAALIRKHQVELIAIGNGTASRETDKLVADMLSDMPPPKPIKVVVSEAGAS
CCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCH
VYSASETAAAEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQYRLAR
HHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNINGPYASRQDLLKVAR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LGQRTFEQCAGFLRITNGTEPLDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALD
HHHHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCC
PRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTATFADGIDDIKDLKPGMMLEGTVTNV
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEECCHHHHH
AAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRS
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEECC
DGDAGSRPQQPRESGKPLRNSQPGNDRGGTRGQSGPAQGALGAALAEAFKRR
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATDINRIASLIAAEIVARAEQAQAAIALLDEGATVPFIARYRKEVTGGLDDTQLRLLSE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLTYLREFDQRREAILSSIREQGKLTPELEAKIAAASTKAELEDIYLPYKPKRRTKAEIA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
RERGLGPLAEAILADRAAVPRELAQAYVTDEVPDVKAAVEGARDILAEQFSENADLVGRL
HHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
RTYMKEKAFLRSRVVEGKEEAGAKFSDYFDHVERWAGVPSHRALAMLRGRNEDVLSLDIE
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEE
VDADDPSPVKPVVRMVAAAYRIGDALPGDRWLMEVAGWTWRVKLSLHLSLDLMRDLRERS
ECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHH
EEEAIHVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAVVDGTGKLVATTTVYPFPPR
HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCC
NDVRGAQTELAALIRKHQVELIAIGNGTASRETDKLVADMLSDMPPPKPIKVVVSEAGAS
CCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCH
VYSASETAAAEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQYRLAR
HHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNINGPYASRQDLLKVAR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LGQRTFEQCAGFLRITNGTEPLDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALD
HHHHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCC
PRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTATFADGIDDIKDLKPGMMLEGTVTNV
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEECCHHHHH
AAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRS
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEECC
DGDAGSRPQQPRESGKPLRNSQPGNDRGGTRGQSGPAQGALGAALAEAFKRR
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]