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The map label for this gene is yfkH [H]

Identifier: 110632679

GI number: 110632679

Start: 354749

End: 355717

Strand: Reverse

Name: yfkH [H]

Synonym: Meso_0318

Alternate gene names: 110632679

Gene position: 355717-354749 (Counterclockwise)

Preceding gene: 110632683

Following gene: 110632678

Centisome position: 8.06

GC content: 59.86

Gene sequence:

>969_bases
ATGACAGGTGCAACGAATCAAGAGGTTGACCGGGGACGTGACGCCCGAAGCCCGTCAGAAATCCCGGCAACCGGCTGGAA
GGATATCGGCTGGCGCGTCTTTCGCGAGATCGGGGAAGACCGCATCACGCTGATCGCGGCAGGCGTTACATTCTACCTGC
TTCTGGCGCTTTTTCCCGCGCTCGCAGCTTTCGTTTCCCTGTACGGGCTTGTTTCAGACCCGGTCACCGTTGCCGACCAC
ATTGCCTATCTCGGGGGCCTGCTGCCTCCCACCGCCATAGAAATCGTGCAGCAACAATTGCAGGCGCTTGTCAGCGAGCG
GAGCCAATCGCTCGGGCTCGGCTTTCTGATCGGTCTGGCCATTGCCCTCTGGAGCGCCAATAACGGGATCAAGGCACTCT
TCGAGGCGATGAATGTTGCCTATGACGAGACGGAGAAGCGGGGCTTCATAAAGCTCAACCTGCTCTCGCTCAGTTTCACG
CTCGCAACGCTTGTCCTTGGGATAATGCTCATCATCGCCGTCGGCGTCGTGCCGGCGGTTCTTGCCATTCTGGGGCTTTC
GCCGTGGGCGGAGACGCTGATCGCTTTCGCGCGTTGGCCCACTCTTTTGCTGGTGAGCATGTTCGGCATCCTGATGCTTT
ACCGCTTCGGGCCGAGCAGGGAACGCCCGAAATGGCGATGGCTTAGCTGGGGCGCGGTGATTGCGACATTGGTTTGGCTC
GCCGCCTCGGTCGCGTTTTCCTATTATCTGCAGAATTTTGCCGATTATGACGCCACCTATGGCTCGCTGGGCGCCATTAT
CGGTCTGATGATGTGGACGTGGATTTCCGTCGTCGTGCTTATCGTCGGCGCGGAGATCGATGCAGAAATCGAACATCAGA
CCGCCCGCGACACCACGACCGGACCACCAGAACCGATGGGGCGCCGAGGGGCAGTCGTCGCCGATACGGTAGGCGATCCC
GTCGACTAG

Upstream 100 bases:

>100_bases
GCGCCGCCCGGCGAGGCAGCTGGCCTCGCTAACCGGGATCAGCCCGCAGGAACGATTTCGACCCGGCTCGATTGGGGTAG
AGTTTACATCGAGACGCCCA

Downstream 100 bases:

>100_bases
AAGCTTTCACGATCAAAAGACGACGCGCTAGATGTTTGAGCGGTCGCGGGAGGTGCGGTGCTGATTTGTGGATAAGCATC
GCTGGCCCGGTCAACGGAAT

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MTGATNQEVDRGRDARSPSEIPATGWKDIGWRVFREIGEDRITLIAAGVTFYLLLALFPALAAFVSLYGLVSDPVTVADH
IAYLGGLLPPTAIEIVQQQLQALVSERSQSLGLGFLIGLAIALWSANNGIKALFEAMNVAYDETEKRGFIKLNLLSLSFT
LATLVLGIMLIIAVGVVPAVLAILGLSPWAETLIAFARWPTLLLVSMFGILMLYRFGPSRERPKWRWLSWGAVIATLVWL
AASVAFSYYLQNFADYDATYGSLGAIIGLMMWTWISVVVLIVGAEIDAEIEHQTARDTTTGPPEPMGRRGAVVADTVGDP
VD

Sequences:

>Translated_322_residues
MTGATNQEVDRGRDARSPSEIPATGWKDIGWRVFREIGEDRITLIAAGVTFYLLLALFPALAAFVSLYGLVSDPVTVADH
IAYLGGLLPPTAIEIVQQQLQALVSERSQSLGLGFLIGLAIALWSANNGIKALFEAMNVAYDETEKRGFIKLNLLSLSFT
LATLVLGIMLIIAVGVVPAVLAILGLSPWAETLIAFARWPTLLLVSMFGILMLYRFGPSRERPKWRWLSWGAVIATLVWL
AASVAFSYYLQNFADYDATYGSLGAIIGLMMWTWISVVVLIVGAEIDAEIEHQTARDTTTGPPEPMGRRGAVVADTVGDP
VD
>Mature_321_residues
TGATNQEVDRGRDARSPSEIPATGWKDIGWRVFREIGEDRITLIAAGVTFYLLLALFPALAAFVSLYGLVSDPVTVADHI
AYLGGLLPPTAIEIVQQQLQALVSERSQSLGLGFLIGLAIALWSANNGIKALFEAMNVAYDETEKRGFIKLNLLSLSFTL
ATLVLGIMLIIAVGVVPAVLAILGLSPWAETLIAFARWPTLLLVSMFGILMLYRFGPSRERPKWRWLSWGAVIATLVWLA
ASVAFSYYLQNFADYDATYGSLGAIIGLMMWTWISVVVLIVGAEIDAEIEHQTARDTTTGPPEPMGRRGAVVADTVGDPV
D

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34957; Mature: 34826

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGATNQEVDRGRDARSPSEIPATGWKDIGWRVFREIGEDRITLIAAGVTFYLLLALFPA
CCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LAAFVSLYGLVSDPVTVADHIAYLGGLLPPTAIEIVQQQLQALVSERSQSLGLGFLIGLA
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IALWSANNGIKALFEAMNVAYDETEKRGFIKLNLLSLSFTLATLVLGIMLIIAVGVVPAV
HHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAILGLSPWAETLIAFARWPTLLLVSMFGILMLYRFGPSRERPKWRWLSWGAVIATLVWL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AASVAFSYYLQNFADYDATYGSLGAIIGLMMWTWISVVVLIVGAEIDAEIEHQTARDTTT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
GPPEPMGRRGAVVADTVGDPVD
CCCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
TGATNQEVDRGRDARSPSEIPATGWKDIGWRVFREIGEDRITLIAAGVTFYLLLALFPA
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]