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The map label for this gene is ygcF [C]

Identifier: 109947611

GI number: 109947611

Start: 933622

End: 934314

Strand: Reverse

Name: ygcF [C]

Synonym: Hac_1076

Alternate gene names: 109947611

Gene position: 934314-933622 (Counterclockwise)

Preceding gene: 109947612

Following gene: 109947606

Centisome position: 60.13

GC content: 34.49

Gene sequence:

>693_bases
ATGAAACTCCCAGTCGTTGAGAGCTTTTTTTCCTTACAAGGTGAAGGCCAAAGGATAGGCAAGCCCAGTCTTTTTTTGCG
TTTGGGGGGGTGTAACCTTTCTTGTAAGGGATTTGGTTGCAAAACCTTATTCAATGATGAAATTTTAATAGGTTGTGATA
GTTTGTATGCGGTGCACCCTAAATTTAAAAAATCTTGGGATTATTATAATGAGCCTAAGCCACTGATTGAGCGATTAGTC
CATTTAACCCCCAATCACAAGAATTTTGATTTCATTCTCACAGGCGGGGAGCCAAGCTTATATTTTAATAACCCTATTTT
AACCAGCGTTTTAGAGCATTTCCATCGCAAAAAAATCCCTTTATTTGTGGAGAGTAACGGCTCTATTTTTTTTGAATTTA
GCTCTATTTTAAAAGAATTGCATTTCACCTTAAGCGTCAAACTCTCTCTTTCTTTAGAAAAAGAAAACAAACGGATTAAT
CTTAAAGCCCTACAAAACATTTTAGATAACGCTAAAAGCGTGCATTTTAAATTTGTTTTGGACAGCAAAAACGCCGTGCA
ATCTATCACAGAAATTAAAAGCCTTTTGAAACAACTTTCATTAAAAAATAATGAAATCTTTTTAATGCCTCTGGGCACAA
ATAACAACGAATTAGACAACCATCTATATGCATTTTTACTCCTTGATAATTAA

Upstream 100 bases:

>100_bases
CATTCAAAGCTTGTGGCAAGACAAGGACTTTTTTAATAAAATCATTAGCGATGAAGAAAAATGCTTTTTTCACGCTAAAC
CCTTACACCAAATCCCTTAA

Downstream 100 bases:

>100_bases
TAATTCATGAGATTGTTTAACATGATTATTGTCGCCTCTTTCTAAGCGATTTTTACCCATTCTGGTTTCGCCTTGTCCCA
TAGTGTATTGCCAAGATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical Sam Domain Protein; Phosphoribosylaminoimidazole-Succinocarboxamide Synthase

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLYAFLLLDN

Sequences:

>Translated_230_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLYAFLLLDN
>Mature_230_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLYAFLLLDN

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26306; Mature: 26306

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEECCCEEEEECCEEEECC
KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP
CHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL
EEEECCCCEEEEHHHHHHHHEEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCEEEEEEEE
DSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLYAFLLLDN
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEECCCEEEEECCEEEECC
KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP
CHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL
EEEECCCCEEEEHHHHHHHHEEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCEEEEEEEE
DSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLYAFLLLDN
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA