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The map label for this gene is ccdA

Identifier: 109947116

GI number: 109947116

Start: 450166

End: 450885

Strand: Direct

Name: ccdA

Synonym: Hac_0523

Alternate gene names: NA

Gene position: 450166-450885 (Clockwise)

Preceding gene: 109947115

Following gene: 109947117

Centisome position: 28.97

GC content: 39.17

Gene sequence:

>720_bases
ATGTTTGATAATACGCTCATCAATTTATTTGAGACAGCGCCTCTTTTGACTTCGCTTTTAGCTGGGATTTTGACTTTTTT
AAGCCCTTGCGTGTTGCCTTTGATCCCAGCGTATATGTCTTATATTTCTCAAATTTCTTTAGAGGATATTAAAGATGGTA
AGGCTGAAAGGGTTTCGGTTTTTCTAAAATCCTTGATGTTTGTGATAGGGTTTTCGCTCGTGTTTTTGGGCGTGGGCATG
TCTATGGCCAAGCTTATCCATAGCTTTTCATTTGCATGGGTGAATTATATCGCCGGGGGGATTGTGATCCTTTTTGGGTT
GCATTTTTTAGGCGTGTTTCGTTTTGCATTTTTATATAAAACTCAAAGCGTTCGTTTGACAAGCAAGTCTAATGGCATGC
AACGCTTTTACCCCTTTCTTTTAGGCATGAGTTTCGCTTTAGGTTGGACGCCATGCATTGGACCGGTATTCACTTCTATA
GTGATCATGAGCGCGAGCAAGGACGCTTATGGCTTGATGCTTATGGTGGTGTTTGTAATGGGCTTGGCGATCCCTTTTTT
ATTGGTGGCTTTAATGTTAGAAAGAGCGCTTTTATTTTTAAAATCCTTAAAGAAATACAACCGCATTATTGAAATTATTT
CAGGGTTAGTGCTTATTTTAATGGGGGTGTTGATTGTGACCAACTCTATGGAAAGCTTGACGAATTTCTTACAAAAATAG

Upstream 100 bases:

>100_bases
ATTTGTGGTAGAAAATAACGAAATTGTGCCTAAAATTAAGTGAGGTTTTATTATCCTAAAAAATATAAGAAATAATTATT
TTTAAAAAGGATTAAAAACT

Downstream 100 bases:

>100_bases
GAGGAAATGGTGCTTTTAAAAAACGCTTCATTTTATGATGATGGTGGTTTAAAAAGAGCAGACATCCGCTTAAAAAATTC
CCTTATTGCAGAGATTAAAG

Product: cytochrome c-type biogenesis protein ccdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MFDNTLINLFETAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGKAERVSVFLKSLMFVIGFSLVFLGVGM
SMAKLIHSFSFAWVNYIAGGIVILFGLHFLGVFRFAFLYKTQSVRLTSKSNGMQRFYPFLLGMSFALGWTPCIGPVFTSI
VIMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLKKYNRIIEIISGLVLILMGVLIVTNSMESLTNFLQK

Sequences:

>Translated_239_residues
MFDNTLINLFETAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGKAERVSVFLKSLMFVIGFSLVFLGVGM
SMAKLIHSFSFAWVNYIAGGIVILFGLHFLGVFRFAFLYKTQSVRLTSKSNGMQRFYPFLLGMSFALGWTPCIGPVFTSI
VIMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLKKYNRIIEIISGLVLILMGVLIVTNSMESLTNFLQK
>Mature_239_residues
MFDNTLINLFETAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGKAERVSVFLKSLMFVIGFSLVFLGVGM
SMAKLIHSFSFAWVNYIAGGIVILFGLHFLGVFRFAFLYKTQSVRLTSKSNGMQRFYPFLLGMSFALGWTPCIGPVFTSI
VIMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLKKYNRIIEIISGLVLILMGVLIVTNSMESLTNFLQK

Specific function: Could be involved in cytochrome c synthesis [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26550; Mature: 26550

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDNTLINLFETAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGKAERVSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FLKSLMFVIGFSLVFLGVGMSMAKLIHSFSFAWVNYIAGGIVILFGLHFLGVFRFAFLYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQSVRLTSKSNGMQRFYPFLLGMSFALGWTPCIGPVFTSIVIMSASKDAYGLMLMVVFVM
HHHHEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLAIPFLLVALMLERALLFLKSLKKYNRIIEIISGLVLILMGVLIVTNSMESLTNFLQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MFDNTLINLFETAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGKAERVSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FLKSLMFVIGFSLVFLGVGMSMAKLIHSFSFAWVNYIAGGIVILFGLHFLGVFRFAFLYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQSVRLTSKSNGMQRFYPFLLGMSFALGWTPCIGPVFTSIVIMSASKDAYGLMLMVVFVM
HHHHEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLAIPFLLVALMLERALLFLKSLKKYNRIIEIISGLVLILMGVLIVTNSMESLTNFLQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]