Click here to switch to the map view.

The map label for this gene is cspC [H]

Identifier: 108812537

GI number: 108812537

Start: 2660344

End: 2660553

Strand: Reverse

Name: cspC [H]

Synonym: YPN_2376

Alternate gene names: 108812537

Gene position: 2660553-2660344 (Counterclockwise)

Preceding gene: 108812538

Following gene: 108812535

Centisome position: 58.67

GC content: 44.29

Gene sequence:

>210_bases
ATGGCAAAGATCAAAGGTCAAGTTAAGTGGTTCAACGAGTCTAAAGGCTTCGGTTTCATCACTCCAGCAGATGGCAGCAA
AGATGTGTTTGTACACTTCTCTGCAATCCAAGGTAATGGCTTCAAAACCTTGGCTGAAGGCCAGAATGTAGAGTTCGAAA
TCCAAGACGGTCAGAAAGGTCCGTCTGCAGTAAACGTTACTGCAATCTAA

Upstream 100 bases:

>100_bases
CTCTGCCGATCCTTATCTTAGTGCCTCAAGCAGTAACGACTCTAGTTTGTCTATGTAAACGCCTACGGGCGAGTTAAACA
ATCCAAAGGAAATACTCAAG

Downstream 100 bases:

>100_bases
TCAGCGTTTGCTGTAAAAACCCGCCTTTGTGCGGGTTTTTTCATATTTGGGGAAACCCTATCAGCCAATCGCCGTAGGCG
GTCACCTTTTTTAAGGCAAG

Product: cold shock-like protein CspC

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPSAVNVTAI

Sequences:

>Translated_69_residues
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPSAVNVTAI
>Mature_68_residues
AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPSAVNVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=69, Percent_Identity=44.9275362318841, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI224586884, Length=69, Percent_Identity=44.9275362318841, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI34098946, Length=69, Percent_Identity=44.9275362318841, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI156415990, Length=70, Percent_Identity=42.8571428571429, Blast_Score=62, Evalue=1e-10,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=98.5507246376812, Blast_Score=138, Evalue=9e-35,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=84.0579710144928, Blast_Score=119, Evalue=4e-29,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=71.6417910447761, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=67.1641791044776, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=68.6567164179104, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=67.1875, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=49.2307692307692, Blast_Score=75, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508335, Length=72, Percent_Identity=43.0555555555556, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7418; Mature: 7287

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG
CCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEEECCCEEEECCCCCEEEEECCCCCC
PSAVNVTAI
CCEEEEEEC
>Mature Secondary Structure 
AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG
CCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEEECCCEEEECCCCCEEEEECCCCCC
PSAVNVTAI
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]