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The map label for this gene is ycdO

Identifier: 108812429

GI number: 108812429

Start: 2548923

End: 2550053

Strand: Reverse

Name: ycdO

Synonym: YPN_2268

Alternate gene names: 108812429

Gene position: 2550053-2548923 (Counterclockwise)

Preceding gene: 108812430

Following gene: 108812428

Centisome position: 56.24

GC content: 46.95

Gene sequence:

>1131_bases
ATGTCTATTTGGTTCTTCCGTCGCACAGCGTTACACGCCGCGTTGTTGTCTCTGCCTGTTTTCGCTATCAGCGCACAGGC
TGCTGATATTCAACAGGTTAAAATCACTGTCAATGATAAACAATGTGAGCCAATGGCACTGACGGTTCCTGCCGGCAAAA
CACAGTTTATTGTGCACAATGTTAGCCAGAAAGGACTGGAGTGGGAGATTTTAAAAGGGGTAATGGTGGTGGAGGAGCGT
GAGAATATCGCGCCAGGTTTTACCCAAAAAATGACGGCGAATCTGGAACCTGGTGAATATGATATGACCTGCGGCTTGTT
AAGTAATCCGAAAGGTAAATTAACTGTAACTGTGGCAGCAGGTGAACAAGCCCCGGTGAAACCCGATGCGATGGCATTAG
TCGGCCCGATTGCTGAATATAAGGTTTATGTCACACAAGAAGTGGCTCAGTTAGTCAGCCAAACCAAAGCGTTCACCGAT
GCAGTGAAGGCTGGGGATCTGGCACTGGCACGTAAATTGTATGCGCCGACTCGCCAGCATTATGAGCGTATCGAACCGAT
TGCCGAACTGTTCTCTGATTTGGACGGCAGTATTGATGCCCGTGAAGATGATTTTGAACAGAAATCGGCAGACCCTAAAT
TTACCGGTTTCCACCGTTTAGAAAAAATCCTGTTTGGAGATAACACAACCAAAGGTGCAGATAAGTTTGCAGACCTGTTG
TATCAGGACACATTGGAACTGCAAAAACGCATTGCTGGTCTGACATTTGCGCCTAATAAAGTGGTGGGAGGGGCGGCAGG
GTTAATTGAGGAAGTCGCAGCCAGTAAAATTAGCGGGGAAGAAGACCGCTATAGCCGTACCGATTTGTGGGATTTTCAAG
CCAACGTCGATGGCGCACAGAAAATTGTCAATCTCCTGAGGCCATTACTGGAAAAAGCAGATAAACCATTACTGCAAAAA
ATTGATGCGAATTTTAACACGGTTGATAGCGTGCTGGCGAAATATCGTACCAAAGAGGGTTATGAATCCTACGAGAAGCT
AACCGATGCGGATCGTAATGCGATGAAAGGACCAATCACTGCTCTGGCGGAAGACCTTGCTCAACTGCGTGGTGTATTAG
GTCTGGATTGA

Upstream 100 bases:

>100_bases
TTCTGTTTTTCCTTCCACCACGTTCCACTGCGGGTTCGGCTATCGCTGCGGCGCGGAAAATTAATCCATAACTAAAATGA
TCAGTTCAGGGAGTTATTAC

Downstream 100 bases:

>100_bases
GGTTGTTAACATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTC
GGCGTTTAATTTTAGGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTD
AVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQK
IDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Sequences:

>Translated_376_residues
MSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTD
AVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQK
IDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD
>Mature_375_residues
SIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEERE
NIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDA
VKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLY
QDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQKI
DANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family

Homologues:

Organism=Escherichia coli, GI1787254, Length=371, Percent_Identity=74.1239892183288, Blast_Score=569, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDO_YERPA (Q1C8M2)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_651145.1
- ProteinModelPortal:   Q1C8M2
- SMR:   Q1C8M2
- STRING:   Q1C8M2
- GeneID:   4120691
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_1233
- eggNOG:   COG2822
- HOGENOM:   HBG570979
- OMA:   TFPPEKV
- ProtClustDB:   PRK10378
- BioCyc:   YPES360102:YPA_1233-MONOMER
- InterPro:   IPR008972
- InterPro:   IPR018976
- Gene3D:   G3DSA:2.60.40.420

Pfam domain/function: PF09375 Peptidase_M75; SSF49503 Cupredoxin

EC number: NA

Molecular weight: Translated: 41354; Mature: 41222

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHN
CCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAA
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEC
GEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQH
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQ
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH
KIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPIT
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALAEDLAQLRGVLGLD
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHN
CEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAA
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEC
GEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQH
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQ
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH
KIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPIT
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALAEDLAQLRGVLGLD
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA