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The map label for this gene is ycdB

Identifier: 108812428

GI number: 108812428

Start: 2547608

End: 2548912

Strand: Reverse

Name: ycdB

Synonym: YPN_2267

Alternate gene names: 108812428

Gene position: 2548912-2547608 (Counterclockwise)

Preceding gene: 108812429

Following gene: 108812426

Centisome position: 56.21

GC content: 49.04

Gene sequence:

>1305_bases
ATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTCGGCGTTTAAT
TTTAGGGATGGGCATGGTGAGTGGTGCTCTGGTATTGGGCGGGGCGAAAACTGCCCAAGCCGCAGATTGTCGATCACCTG
ATGTCGCTGGAACCCAAGATGAGCGTTGGCAAAAACAGCCGTTTTATGGTCAACATCAAGCGGGGGTGTTAACGCCTCAA
CAAGCGGCAATGATGTTGGTGGCTTTTGATGTACTGGCTACCGATAAAACGTCATTAATTCGGTTATTCAAATTACTGAC
CGAACGGCTGGCCTTTCTAACAACTGGCGGGCGGGCACCATCAGTGAATGCCAAACTGCCGCCACTAGATTCGGGGATCA
TGGGACCTGAAATTTATCCTGATAATCTGACCGTTACTGTTTCTGTCGGTAATGCATTATTTGATGAGCGTTTTGGTTTA
CAGGGGCAGAAACCGCTGCGACTACAGCGAATGACCCGCTTTCCTAATGACTCTTTGGATGCGGGGCTATGTCATGGTGA
TGTGATGTTGCAAATTTGTGCTAATACCAATGAAACGGTGATCCATGCGCTGCGCGATATTATTAAGCACACACCCGATC
TACTCAGTGTCCGCTGGAAGCGTGAGGGGTTTATTTCTGCCCATGCTGCTCGCAGTAAAGGTCAGGATACGCCCATTAAT
TTATTGGGTTTTAAAGACGGGACAGCGAATCCAAAAATCAGTAATAAACCGCTGATCAATAATGTGGTCTGGGTATCAAA
TAATGCAGGCGAGCCTGCATGGGCGGTAGGGGGAAGCTATCAGGTGGTGCGGATAATCCGTTTCAAAGTGGAGTTCTGGG
ATCGCACACCGTTGCAAGAACAGCAAACCATTTTTGGCCGTGATAAGAACAGTGGCGCACCTTTGGGAATGCAACATGAG
CATGATGAACCCAATTACGCCAAAGATCCTGAAGGGAAGGTCATCCCGATGGATGCCCATATTCGGTTAGCCAATCCACG
GACAATTGAAACGCAGCGTAACCTAATGTTGCGCCGTGGCTACAGCTACTCATTGGGGGTCTCAAACTCCGGGCAACTGG
ATATGGGGTTACTGTTTGTTTGCTATCAGTCGGATTTGGCGCAAGCGTTCTTAACGGTACAAGAACGCCTAAATGGTGAA
GCGTTGGAAGAGTATGTCAAACCAATTGGTGGGGGGTATTTCTTTACCTTACCCGGTGTTGCAGATGCTAATCACTATTT
GGCACAAAGCCTGCTCGAAGCTTAA

Upstream 100 bases:

>100_bases
ACCGATGCGGATCGTAATGCGATGAAAGGACCAATCACTGCTCTGGCGGAAGACCTTGCTCAACTGCGTGGTGTATTAGG
TCTGGATTGAGGTTGTTAAC

Downstream 100 bases:

>100_bases
AATACAGCACCGCCATCATCGCGCGGTGCTTTTTATGACGTCTACATTCTTTTATGGCGTCGTGTTCATTGTCATTTCTT
TATGATCAACCCTTCAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKTAQAADCRSPDVAGTQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGNALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQDTPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFFTLPGVADANHYLAQSLLEA

Sequences:

>Translated_434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKTAQAADCRSPDVAGTQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGNALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQDTPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFFTLPGVADANHYLAQSLLEA
>Mature_434_residues
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKTAQAADCRSPDVAGTQDERWQKQPFYGQHQAGVLTPQ
QAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAPSVNAKLPPLDSGIMGPEIYPDNLTVTVSVGNALFDERFGL
QGQKPLRLQRMTRFPNDSLDAGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQDTPIN
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQEQQTIFGRDKNSGAPLGMQHE
HDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRGYSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGE
ALEEYVKPIGGGYFFTLPGVADANHYLAQSLLEA

Specific function: May have a role as a peroxidase

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family

Homologues:

Organism=Escherichia coli, GI1787255, Length=423, Percent_Identity=71.8676122931442, Blast_Score=627, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDB_YERPE (Q7CI09)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AE0226
- RefSeq:   NP_669756.1
- RefSeq:   NP_992895.1
- RefSeq:   YP_002346850.1
- ProteinModelPortal:   Q7CI09
- PeroxiBase:   5876
- GeneID:   1147397
- GeneID:   1174691
- GeneID:   2765335
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO1856
- KEGG:   ypk:y2450
- KEGG:   ypm:YP_1537
- HOGENOM:   HBG296848
- OMA:   VERWDRT
- ProtClustDB:   CLSK888989
- BioCyc:   YPES187410:Y2450-MONOMER
- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311
- TIGRFAMs:   TIGR01413
- TIGRFAMs:   TIGR01409
- TIGRFAMs:   TIGR01412

Pfam domain/function: PF04261 Dyp_perox; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 47801; Mature: 47801

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS51404 DYP_PEROXIDASE; PS51318 TAT

Important sites: ACT_SITE 246-246

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKTAQAADCRSPDVAGTQD
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCEEEECCCCCCCCCCCCCCCCCCCCH
ERWQKQPFYGQHQAGVLTPQQAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
SVNAKLPPLDSGIMGPEIYPDNLTVTVSVGNALFDERFGLQGQKPLRLQRMTRFPNDSLD
CCCCCCCCCCCCCCCCEECCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
AGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQDTPIN
CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCEE
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQE
EEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEEEEEEEECCCCCCCH
QQTIFGRDKNSGAPLGMQHEHDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEHHHHHHHHHCC
YSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGEALEEYVKPIGGGYFFTLPGV
CCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCC
ADANHYLAQSLLEA
CCCHHHHHHHHHCC
>Mature Secondary Structure
MRDKTGPKFGPYQPDDEAVSPSRRRLILGMGMVSGALVLGGAKTAQAADCRSPDVAGTQD
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCEEEECCCCCCCCCCCCCCCCCCCCH
ERWQKQPFYGQHQAGVLTPQQAAMMLVAFDVLATDKTSLIRLFKLLTERLAFLTTGGRAP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
SVNAKLPPLDSGIMGPEIYPDNLTVTVSVGNALFDERFGLQGQKPLRLQRMTRFPNDSLD
CCCCCCCCCCCCCCCCEECCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
AGLCHGDVMLQICANTNETVIHALRDIIKHTPDLLSVRWKREGFISAHAARSKGQDTPIN
CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCEE
LLGFKDGTANPKISNKPLINNVVWVSNNAGEPAWAVGGSYQVVRIIRFKVEFWDRTPLQE
EEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEEEEEEEECCCCCCCH
QQTIFGRDKNSGAPLGMQHEHDEPNYAKDPEGKVIPMDAHIRLANPRTIETQRNLMLRRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEHHHHHHHHHCC
YSYSLGVSNSGQLDMGLLFVCYQSDLAQAFLTVQERLNGEALEEYVKPIGGGYFFTLPGV
CCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCC
ADANHYLAQSLLEA
CCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430