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The map label for this gene is yqjD [H]

Identifier: 108812287

GI number: 108812287

Start: 2402762

End: 2403070

Strand: Reverse

Name: yqjD [H]

Synonym: YPN_2125

Alternate gene names: 108812287

Gene position: 2403070-2402762 (Counterclockwise)

Preceding gene: 108812290

Following gene: 108812286

Centisome position: 52.99

GC content: 47.9

Gene sequence:

>309_bases
ATGAACCGAGATAATGAACCACCAACCTCGTTAGAGGATGACCTGGCTATGTTGACCGATACCCTGGAAGAGGTACTGCG
CTATTCCGGAACGTTGGCTGATGAAAGCTATCAAGAAATTAAAGCGCGTGCAGAGAAAGCACTAAAGGAGGTTCAAAGCC
GCTTGAGTGACCACGGTGGATGTCATATCAAGCAGATAAAAGCCATGGCATGTTGTACTGATGATTATGTTCGTCAGAAC
CCATGGTGTAGCGTGGGTATTGGCGCGACTATTGGACTGATTGTTGGGCTATTGGTGGCTCGTCGCTAA

Upstream 100 bases:

>100_bases
TTACGAACAGTAAGCTCATCGGGATTATCTCCCTTGCTGCCTTCCTGCAACTCGAATTATTTTGGGTATAAGATGCCTTT
TTCACGCATGGAGAATGCAC

Downstream 100 bases:

>100_bases
CCCGTTCTCTTGCTTACGTTGTGGTTACTGGCCCTTAAGTGGGCCACTTTTATCGTAAGCATAATGAGCGTGTTGATAAT
AAATATTCGCCTTACTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MNRDNEPPTSLEDDLAMLTDTLEEVLRYSGTLADESYQEIKARAEKALKEVQSRLSDHGGCHIKQIKAMACCTDDYVRQN
PWCSVGIGATIGLIVGLLVARR

Sequences:

>Translated_102_residues
MNRDNEPPTSLEDDLAMLTDTLEEVLRYSGTLADESYQEIKARAEKALKEVQSRLSDHGGCHIKQIKAMACCTDDYVRQN
PWCSVGIGATIGLIVGLLVARR
>Mature_102_residues
MNRDNEPPTSLEDDLAMLTDTLEEVLRYSGTLADESYQEIKARAEKALKEVQSRLSDHGGCHIKQIKAMACCTDDYVRQN
PWCSVGIGATIGLIVGLLVARR

Specific function: Unknown

COG id: COG4575

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli elaB and ygaM [H]

Homologues:

Organism=Escherichia coli, GI1789485, Length=92, Percent_Identity=46.7391304347826, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1788601, Length=77, Percent_Identity=46.7532467532467, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1789027, Length=93, Percent_Identity=35.4838709677419, Blast_Score=69, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010279 [H]

Pfam domain/function: PF05957 DUF883 [H]

EC number: NA

Molecular weight: Translated: 11295; Mature: 11295

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRDNEPPTSLEDDLAMLTDTLEEVLRYSGTLADESYQEIKARAEKALKEVQSRLSDHGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
CHIKQIKAMACCTDDYVRQNPWCSVGIGATIGLIVGLLVARR
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRDNEPPTSLEDDLAMLTDTLEEVLRYSGTLADESYQEIKARAEKALKEVQSRLSDHGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
CHIKQIKAMACCTDDYVRQNPWCSVGIGATIGLIVGLLVARR
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]