Click here to switch to the map view.

The map label for this gene is rhiA [H]

Identifier: 108812286

GI number: 108812286

Start: 2401563

End: 2402207

Strand: Reverse

Name: rhiA [H]

Synonym: YPN_2124

Alternate gene names: 108812286

Gene position: 2402207-2401563 (Counterclockwise)

Preceding gene: 108812287

Following gene: 108812285

Centisome position: 52.98

GC content: 45.74

Gene sequence:

>645_bases
ATGAGTAATACTTTGGATCTATCAGCCGCTGCTGGCACCCCCTATCAAGTTAAGTTCGTTAATCATTCATCTTCGGCCTG
GACTGTTTTTTTATATCAAAAAATGCCAAATCAACCCTCGGATGTCTTTTCTTTGGCTTGGCAAGCCTCGCCATTTAAAG
TCGCACCTAATAGTTTCTTTACGTTTAAATGGTCGATTAACTACTCATTTGTCTGGGGGAGAACCGGGCATCTCACTGAC
GGGGTTCTTTTTGAAGCGGGTGCTATTTTGGATGCTGATCCCACCAGTCATAATCAGGTGACGTTTGATACTGCGGATAA
CACACCCACTTTTAGCAATCTCTCAACCGCAGGGCAAGCGGGTAAATTGACGATTATTGAAGGCGGCAGCATGCCAAATA
ATGTTTATTCGACGGGGATTGGCATGTCCGGGCAGGGCACCTTTGCCCAGCAAGTCTTAGCCAATACAACTCAACTCTAT
ACGCCTGAACCCCTCTATTTTATTGCTGCGGGTCAGGGGGTCCAGATGGGGCAGGTGTTGGCACAAACGGTGACGAACAG
TAATGAGTTGAAATACTCGGGTAATATATATTCATTAGTCGCCACATTGGATGAAACACAGCAATGGAATGTCGTACCTG
CTTAA

Upstream 100 bases:

>100_bases
CTGAGAAATGGCTTGGCTCTCTATGTCACCTTTATTTGAAATAGGCGAATATCGTTAGCGTGAATAATATACTTTACATA
AATGTAATAAGGAACTCATC

Downstream 100 bases:

>100_bases
TATAATCAACGTCATTGGAGTTGCAGCAGTGTCAGCGTTTCCCTTGGGCCGGATCATGGATACCCGCGCACTTAACAAGG
CTAATAGGCCCTCTGCTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSNTLDLSAAAGTPYQVKFVNHSSSAWTVFLYQKMPNQPSDVFSLAWQASPFKVAPNSFFTFKWSINYSFVWGRTGHLTD
GVLFEAGAILDADPTSHNQVTFDTADNTPTFSNLSTAGQAGKLTIIEGGSMPNNVYSTGIGMSGQGTFAQQVLANTTQLY
TPEPLYFIAAGQGVQMGQVLAQTVTNSNELKYSGNIYSLVATLDETQQWNVVPA

Sequences:

>Translated_214_residues
MSNTLDLSAAAGTPYQVKFVNHSSSAWTVFLYQKMPNQPSDVFSLAWQASPFKVAPNSFFTFKWSINYSFVWGRTGHLTD
GVLFEAGAILDADPTSHNQVTFDTADNTPTFSNLSTAGQAGKLTIIEGGSMPNNVYSTGIGMSGQGTFAQQVLANTTQLY
TPEPLYFIAAGQGVQMGQVLAQTVTNSNELKYSGNIYSLVATLDETQQWNVVPA
>Mature_213_residues
SNTLDLSAAAGTPYQVKFVNHSSSAWTVFLYQKMPNQPSDVFSLAWQASPFKVAPNSFFTFKWSINYSFVWGRTGHLTDG
VLFEAGAILDADPTSHNQVTFDTADNTPTFSNLSTAGQAGKLTIIEGGSMPNNVYSTGIGMSGQGTFAQQVLANTTQLYT
PEPLYFIAAGQGVQMGQVLAQTVTNSNELKYSGNIYSLVATLDETQQWNVVPA

Specific function: May be involved in plant-microbe interaction [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23103; Mature: 22972

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTLDLSAAAGTPYQVKFVNHSSSAWTVFLYQKMPNQPSDVFSLAWQASPFKVAPNSFF
CCCCEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHEEEEECCCCEEECCCCEE
TFKWSINYSFVWGRTGHLTDGVLFEAGAILDADPTSHNQVTFDTADNTPTFSNLSTAGQA
EEEEEEEEEEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
GKLTIIEGGSMPNNVYSTGIGMSGQGTFAQQVLANTTQLYTPEPLYFIAAGQGVQMGQVL
CEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHCCCEECCCCCEEEEEECCCCHHHHHH
AQTVTNSNELKYSGNIYSLVATLDETQQWNVVPA
HHHHCCCCCEEECCCEEEEEEECCCCCCEEEECC
>Mature Secondary Structure 
SNTLDLSAAAGTPYQVKFVNHSSSAWTVFLYQKMPNQPSDVFSLAWQASPFKVAPNSFF
CCCEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHEEEEECCCCEEECCCCEE
TFKWSINYSFVWGRTGHLTDGVLFEAGAILDADPTSHNQVTFDTADNTPTFSNLSTAGQA
EEEEEEEEEEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
GKLTIIEGGSMPNNVYSTGIGMSGQGTFAQQVLANTTQLYTPEPLYFIAAGQGVQMGQVL
CEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHCCCEECCCCCEEEEEECCCCHHHHHH
AQTVTNSNELKYSGNIYSLVATLDETQQWNVVPA
HHHHCCCCCEEECCCEEEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]