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The map label for this gene is menF [H]

Identifier: 108812285

GI number: 108812285

Start: 2399668

End: 2401041

Strand: Reverse

Name: menF [H]

Synonym: YPN_2123

Alternate gene names: 108812285

Gene position: 2401041-2399668 (Counterclockwise)

Preceding gene: 108812286

Following gene: 108812284

Centisome position: 52.95

GC content: 51.31

Gene sequence:

>1374_bases
GTGGTCGTGAAACAACTTTCTGGTTTGCTGGGTGAATTACGACAGAAATTATGTGCCGGTTTCCCTGAACAGGCAGGTAT
TCAACAACTTATTTTTCCAGCACCCGGCTTGGTGGGCCGCCAATTGTTAGAGTGGTTAACTGCTCAGACTCACTTTCCTC
AATTTTATTGGCGTCACCGTGACAACCATGAAGAAGCCGCCGTCTGCGGGCAAACCCGCTCATTTGCCGATATGAAAGAT
GCCGATGATTTTATTCAGCAAAACCCTGATGCTAATGGGCTGCGTATTTGGGGCCTCAATGCATTTGAACCGGTGATGGT
ATTCGGGCAACTAACAGATAATGGCCTGGTCAGTGGAAAAAACGCCCAAGCCAGCTTTCTTTTTCTACCGCGTCTTGAAA
TATTACGCCGGGGTAAAAAAACCTCGCTCACCCTTAATTTGAGCAGCGAGACCTCCCTACAGAAAGATGCCTTACAGGCC
ATCACGTTTATTGACCAATTGATGGCAGCCCGCGCTCTACCTGTGTTGAATGCGCGTATCCAGCATTCGAGTCATACACC
GGGATATCCGCAATGGCGCAATCTGATACAGCAAGCGCTAAATGATATTGAGCAGCAAAAGCTCGACAAAGTGGTACTGG
CACGGACCACGACGTTGACGCTGAATAAACCGCTTTCGTGCGCTGCATTTATGGCTGCCAGCCGACAGGTCAATCACCGT
TGTTATCACTTTATGTTACGTTTTGATGATCGACAGGCCTTTCTGGGTTCCAGTCCCGAACGGCTCTATCTACGCCAGCA
ATTACATTTAGAAACCGAAGCATTGGCGGGGACCGTCTCTAATCTTGATAGCGACCCACAGGCGGCGGTATTGGCAGATT
GGTTGATGCATGATGAAAAGAATCAGCGCGAGAATTTATTGGTGGTAGACGATATTTGTCAGCGCTTGCAAGGTGGGGTA
ACCGCCGTGGATGTCATGCCGCCAGAAATTATTCGCTTGCGCAAAGTACAGCATTTGCGCCGCCGTATCTGCGCGCAACT
CAGCCGGGCCAGTGATACTGACTGCCTGCAACGCTTGCAGCCGACTGCGGCGGTGGCGGGGTTGCCCCGTGAGGCGGCGC
GGCAGTTTATTGCCAAACATGAGCTATTTTCCCGTGGCTGGTATGCGGGTTCTGCCGGTTATTTGTCACTTAAACGCACT
GAATTCAGTGTGGCCCTGCGTTCAGCGCGAGTCGATGGGCAGCAGATTCACCTGTATGCCGGGGCGGGGATCGTGGCCGG
TTCTGATGCGGAACAAGAGTGGCAAGAGATCGATAATAAGTCAGCAGGTTTACAAAGCTTGTTGGAGCACGAAGCGCAGC
CCGTTAAAGCCTAA

Upstream 100 bases:

>100_bases
ATATCAAACATTAGTGTGATAAGTAACAATAACTTTCCAATCCGACTTTTCTTATTATTATCACCCCGTATAATCCCACT
CTTTCTGTTGATTTACCGAG

Downstream 100 bases:

>100_bases
AATGCCGCAATTAACCGCACTTGTTATAGGGACGGATTGTCGCCCCCATGTGGGCGGTGTAGACTGTCAAACCGGAGCCA
CAACTCGGCAAGTATTAGCC

Product: menaquinone-specific isochorismate synthase

Products: NA

Alternate protein names: Isochorismate mutase [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MVVKQLSGLLGELRQKLCAGFPEQAGIQQLIFPAPGLVGRQLLEWLTAQTHFPQFYWRHRDNHEEAAVCGQTRSFADMKD
ADDFIQQNPDANGLRIWGLNAFEPVMVFGQLTDNGLVSGKNAQASFLFLPRLEILRRGKKTSLTLNLSSETSLQKDALQA
ITFIDQLMAARALPVLNARIQHSSHTPGYPQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHR
CYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVDDICQRLQGGV
TAVDVMPPEIIRLRKVQHLRRRICAQLSRASDTDCLQRLQPTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRT
EFSVALRSARVDGQQIHLYAGAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA

Sequences:

>Translated_457_residues
MVVKQLSGLLGELRQKLCAGFPEQAGIQQLIFPAPGLVGRQLLEWLTAQTHFPQFYWRHRDNHEEAAVCGQTRSFADMKD
ADDFIQQNPDANGLRIWGLNAFEPVMVFGQLTDNGLVSGKNAQASFLFLPRLEILRRGKKTSLTLNLSSETSLQKDALQA
ITFIDQLMAARALPVLNARIQHSSHTPGYPQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHR
CYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVDDICQRLQGGV
TAVDVMPPEIIRLRKVQHLRRRICAQLSRASDTDCLQRLQPTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRT
EFSVALRSARVDGQQIHLYAGAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA
>Mature_457_residues
MVVKQLSGLLGELRQKLCAGFPEQAGIQQLIFPAPGLVGRQLLEWLTAQTHFPQFYWRHRDNHEEAAVCGQTRSFADMKD
ADDFIQQNPDANGLRIWGLNAFEPVMVFGQLTDNGLVSGKNAQASFLFLPRLEILRRGKKTSLTLNLSSETSLQKDALQA
ITFIDQLMAARALPVLNARIQHSSHTPGYPQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHR
CYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVDDICQRLQGGV
TAVDVMPPEIIRLRKVQHLRRRICAQLSRASDTDCLQRLQPTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRT
EFSVALRSARVDGQQIHLYAGAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA

Specific function: Menaquinone biosynthesis. [C]

COG id: COG1169

COG function: function code HQ; Isochorismate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismate synthase family [H]

Homologues:

Organism=Escherichia coli, GI87082077, Length=449, Percent_Identity=51.8930957683742, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1786809, Length=239, Percent_Identity=28.4518828451883, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788114, Length=210, Percent_Identity=30.952380952381, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787518, Length=299, Percent_Identity=27.4247491638796, Blast_Score=62, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6320935, Length=215, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005801
- InterPro:   IPR015890
- InterPro:   IPR004561 [H]

Pfam domain/function: PF00425 Chorismate_bind [H]

EC number: =5.4.4.2 [H]

Molecular weight: Translated: 51188; Mature: 51188

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVKQLSGLLGELRQKLCAGFPEQAGIQQLIFPAPGLVGRQLLEWLTAQTHFPQFYWRHR
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
DNHEEAAVCGQTRSFADMKDADDFIQQNPDANGLRIWGLNAFEPVMVFGQLTDNGLVSGK
CCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCC
NAQASFLFLPRLEILRRGKKTSLTLNLSSETSLQKDALQAITFIDQLMAARALPVLNARI
CCCEEEEECCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHSSHTPGYPQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHH
CYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEK
HHHEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
NQRENLLVVDDICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRICAQLSRASDTDCLQRLQ
CCCCCEEEHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
PTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRTEFSVALRSARVDGQQIHLYA
CHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE
GAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA
CCCEEECCCHHHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVVKQLSGLLGELRQKLCAGFPEQAGIQQLIFPAPGLVGRQLLEWLTAQTHFPQFYWRHR
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
DNHEEAAVCGQTRSFADMKDADDFIQQNPDANGLRIWGLNAFEPVMVFGQLTDNGLVSGK
CCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCC
NAQASFLFLPRLEILRRGKKTSLTLNLSSETSLQKDALQAITFIDQLMAARALPVLNARI
CCCEEEEECCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHSSHTPGYPQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHH
CYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEK
HHHEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
NQRENLLVVDDICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRICAQLSRASDTDCLQRLQ
CCCCCEEEHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
PTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRTEFSVALRSARVDGQQIHLYA
CHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE
GAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA
CCCEEECCCHHHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8549818; 8764478; 9205837; 9278503; 2666397; 7984428 [H]