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The map label for this gene is 108798022

Identifier: 108798022

GI number: 108798022

Start: 1147355

End: 1147855

Strand: Direct

Name: 108798022

Synonym: Mmcs_1049

Alternate gene names: NA

Gene position: 1147355-1147855 (Clockwise)

Preceding gene: 108798021

Following gene: 108798023

Centisome position: 20.11

GC content: 70.26

Gene sequence:

>501_bases
ATGGACGATCCGGAAGCCACGATGATGCGCGTGCTCTACGACGAGCACGCCGATGCATTGTGGCGGTACGCGCTCAAACT
GACCGGTGACGCCGCGACCGCCGAGGATGTCGTCCAGGAGACGCTGCTGCGGGCCTGGCGGCACCGGCCGAACGGGTCGG
CGCGGGCCTGGTTGTTCACCGTGGCCCGCAATCTGGTGATCGACGAGCGGCGCAGCGCGCGCTACCGCCGCGAGGCCGGG
ACCCCGGACGTCGACACCGTGGCGCAGCCCAGCGAACCGGACAAGGTGGACTCCGCGCTGGACCGGATGCTGATCGGCTC
GGCGCTCGCGCAGTTGTCCGAGGACCACCGGGCGGTCGTCCGGCGCGCGTACTACCAGGGGTGGACGACGGGGCAGATCG
CGGCGGAACTCGAGATCCCGGAGGGGACCGTGAAGTCCCGGCTGCACTACGCCGTGCGGGCGTTGCGACTGAACCTGCAG
GAGATGGGGGTGACGCGATGA

Upstream 100 bases:

>100_bases
GCACACCGTGGCGGTCACCGAGGACGGGCCCCGCATCCTCACGCTGCCCGCGGACTGAACCAAACCGCAGCCGGCGTCGT
GTACCTGACGGAGGTTGGGG

Downstream 100 bases:

>100_bases
TCGAAGCTCTGGGCGATCCCTATCTGCAATGGGACGCCGCCTACGTGCTTGGCTCGTTGTCCAGCGCCGATCGGCGCGAG
TTCGAGGCGCACATGCAGAC

Product: RNA polymerase sigma factor SigL

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Factor SigL; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase; Sigma-70 Family RNA Polymerase; AlteRNAtive RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma Factor SigY; Sigma Factor Sigma; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-; RNA Polymerase Sigma-24 Subunit; ECF Family Sigma Factor E; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; AlteRNAtive RNA Polymerase Sigma Factor SigL; RNA Polymerase Sigma Factor SigK; Sigma-70 Region 2 Domain-Containing Protein; ECF Family RNA Polymerase Sigma Factor W; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; Sigma-70 Factor; RNA Polymerase Sigma-E Factor; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor Family Protein; DNA-Directed RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF-Family Sigma Factor E; Sigma Factor; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-H Factor; RNA Polymerase ECF-Type Sigma Factor SigE

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPNGSARAWLFTVARNLVIDERRSARYRREAG
TPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQ
EMGVTR

Sequences:

>Translated_166_residues
MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPNGSARAWLFTVARNLVIDERRSARYRREAG
TPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQ
EMGVTR
>Mature_166_residues
MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPNGSARAWLFTVARNLVIDERRSARYRREAG
TPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQ
EMGVTR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18819; Mature: 18819

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPNGSARAWLFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
VARNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR
HHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPNGSARAWLFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
VARNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR
HHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA