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The map label for this gene is 108798023

Identifier: 108798023

GI number: 108798023

Start: 1147852

End: 1148571

Strand: Direct

Name: 108798023

Synonym: Mmcs_1050

Alternate gene names: NA

Gene position: 1147852-1148571 (Clockwise)

Preceding gene: 108798022

Following gene: 108798024

Centisome position: 20.12

GC content: 70.14

Gene sequence:

>720_bases
ATGATCGAAGCTCTGGGCGATCCCTATCTGCAATGGGACGCCGCCTACGTGCTTGGCTCGTTGTCCAGCGCCGATCGGCG
CGAGTTCGAGGCGCACATGCAGACCTGCGACCGGTGTCGGGCGGCCGTCGCCGAGCTCAGCGGCATACCCGCCCTGTTGT
CGATGCTCGACGCCGACGAAGTCGACGGTCAACTCGACGGCGACGAGCCCGAACCGCCGCCGCTGCGGCCCGAGGTGCTG
GATTCGGTACTCGACAAGGTCAAATGGCGCAGGCGCCGGTCGCGGTGGATGACGTCGGCGGCGGTGGGATTGGCGGCCGC
AGTGCTCGCCGTCGGGCTGGTCATCGCGATCCGTCCGGGCGCCGTCGGAATGCAGAACGGCACGCCGGAGGTGACCGCGG
CGACCTACGAGATGACCAAGCTCGCGCCGACACCGTTCAACGCGACCGTGAGCCTGTCCGATTTCGGCTGGGGCACCCGT
ATCGACATGGCCTGCACGTACGGCCAATGGTCCGGCGGCGGGCCCGCCGCGCCGCCGAGCCGGCTGGGCATGGTGGTGGT
CGGCCGCGACGGCACCCGCTCGGAGATCGCGACGTGGCTGGGACTGTCCGGCGCGACGGCCCTGCCGAGCGGCAACACCA
CGCTGCACCGCGACGACATCGCTGCGGTGCAGCTGGTCGCGGCCGACACCCGTGAGGTGCTGCTCGAGAAGACGCTGTGA

Upstream 100 bases:

>100_bases
TCGCGGCGGAACTCGAGATCCCGGAGGGGACCGTGAAGTCCCGGCTGCACTACGCCGTGCGGGCGTTGCGACTGAACCTG
CAGGAGATGGGGGTGACGCG

Downstream 100 bases:

>100_bases
GACCGGGCAATGGTATGAAAGGTCGGTGACCCAAGGGCCTGACGAGCACGACCCGATCGCCCTGGCCCGTGCGAACTGGG
AATCCGCAGGCTGGGGTGAG

Product: putative transmembrane anti-sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIEALGDPYLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADEVDGQLDGDEPEPPPLRPEVL
DSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPGAVGMQNGTPEVTAATYEMTKLAPTPFNATVSLSDFGWGTR
IDMACTYGQWSGGGPAAPPSRLGMVVVGRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL

Sequences:

>Translated_239_residues
MIEALGDPYLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADEVDGQLDGDEPEPPPLRPEVL
DSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPGAVGMQNGTPEVTAATYEMTKLAPTPFNATVSLSDFGWGTR
IDMACTYGQWSGGGPAAPPSRLGMVVVGRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL
>Mature_239_residues
MIEALGDPYLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADEVDGQLDGDEPEPPPLRPEVL
DSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPGAVGMQNGTPEVTAATYEMTKLAPTPFNATVSLSDFGWGTR
IDMACTYGQWSGGGPAAPPSRLGMVVVGRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25406; Mature: 25406

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEALGDPYLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADE
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VDGQLDGDEPEPPPLRPEVLDSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
AVGMQNGTPEVTAATYEMTKLAPTPFNATVSLSDFGWGTRIDMACTYGQWSGGGPAAPPS
CCCCCCCCCCEEEEEEHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCHH
RLGMVVVGRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL
HCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEALGDPYLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADE
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VDGQLDGDEPEPPPLRPEVLDSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
AVGMQNGTPEVTAATYEMTKLAPTPFNATVSLSDFGWGTRIDMACTYGQWSGGGPAAPPS
CCCCCCCCCCEEEEEEHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCHH
RLGMVVVGRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL
HCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA