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The map label for this gene is ykgD [C]

Identifier: 108798012

GI number: 108798012

Start: 1135833

End: 1136795

Strand: Direct

Name: ykgD [C]

Synonym: Mmcs_1039

Alternate gene names: 108798012

Gene position: 1135833-1136795 (Clockwise)

Preceding gene: 108798011

Following gene: 108798013

Centisome position: 19.91

GC content: 67.19

Gene sequence:

>963_bases
ATGCGGTGGCGTTGGCTGCTTCGGCCTAATAGCTTGTCGGGTGTGAACCCTGACGACGGGTTGGGGCCGGTCGAGATGCT
GGTGTCTCTGCTGCGACCGAAGACGGTCGAGTCGAAGATCATCAGCGGTGCCGGCGAGTGGAGCGTGCGCGAGCCGCGCT
ACGCCGACCCTGCGTTCTGCGTGATGCTCGAGGGTTCATGCGTGCTGCGACTCGATGGCTACCACCCGATCGAACTGCAT
GCGGGTGACTTCATGCTCCTGACAGACATGCCCGAGTTCGTCATGTCGAGCGGGCACGGCGCCATGTCGACGGTTCTGGC
GGCAGGACCGGTGAACGGGGTGGCGCGGCACGGTGACCCCGATGGTCCCGCGTCGATGCGGATGCTGGGCGGGTACTTCC
GGTTCGAACGGGAGAACGCGCCGCTGCTGGCACCGCTGTTGCCGCGGATCGTCCTGGTGCGTCACGACGAGCCCCGGGCT
TCGCGGTTGAGCCGGATCGTCGCGCTGATCAGCGAGGAGACCGGATCAGCGGCGCCGAGTGAACTGATCCTCGTGCGCCT
CGTCGAGGTGCTGCTGGTCGAGGCCATGCGCTTGCGAGCCGCACCGGTGGAGGGTGTGGAGCGGGGTCTGGTCGCTGGGT
TGGACGATCCTGTGCTCGCGCCTGCGCTCCGGAAGATGCACACCGACATCGCTTTCGGCTGGACGGTCGAACGGCTAGCC
CGGGCGGCCGGGGTGTCGCGAGCGGTGTTCGCCGAAAGATTCAGCCGCACAATGGGTATGCCGCCGATGCAGTATCTGGC
GCAGTGGCGGATGGCGCTGGCGAAGGAGATGCTCCGCACGGAAGACGTGTCGATCGCGGAGGTGGCGCGCCGGACGGGGT
ACCTGTCGGCGAGCGCATTCACCACCGCGTTCACCCGGATGACGGGGACTTCGCCGAGTGCCTTCGCGCGCGCTTCGGTC
TGA

Upstream 100 bases:

>100_bases
AGCCAACCCGGTCCGGTGACCACTGCGGAGGACGTGGCGACGGTGGTGCTGCGCGCCGCCGGTGACACGTCGGGACAGTT
GCGGTTTCCGGCCGGGGCGG

Downstream 100 bases:

>100_bases
GTTCTGGACGGGGTTGTCCCCAGCGGCGAATTCATCCACAGGCGTGGGGTTTTCGAGGGTTGCGTGTCAGACCCGTCTGC
CAGAATTGAAGACATGTTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRWRWLLRPNSLSGVNPDDGLGPVEMLVSLLRPKTVESKIISGAGEWSVREPRYADPAFCVMLEGSCVLRLDGYHPIELH
AGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDPDGPASMRMLGGYFRFERENAPLLAPLLPRIVLVRHDEPRA
SRLSRIVALISEETGSAAPSELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLA
RAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAFTTAFTRMTGTSPSAFARASV

Sequences:

>Translated_320_residues
MRWRWLLRPNSLSGVNPDDGLGPVEMLVSLLRPKTVESKIISGAGEWSVREPRYADPAFCVMLEGSCVLRLDGYHPIELH
AGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDPDGPASMRMLGGYFRFERENAPLLAPLLPRIVLVRHDEPRA
SRLSRIVALISEETGSAAPSELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLA
RAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAFTTAFTRMTGTSPSAFARASV
>Mature_320_residues
MRWRWLLRPNSLSGVNPDDGLGPVEMLVSLLRPKTVESKIISGAGEWSVREPRYADPAFCVMLEGSCVLRLDGYHPIELH
AGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDPDGPASMRMLGGYFRFERENAPLLAPLLPRIVLVRHDEPRA
SRLSRIVALISEETGSAAPSELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLA
RAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAFTTAFTRMTGTSPSAFARASV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=209, Percent_Identity=26.7942583732057, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34954; Mature: 34954

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWRWLLRPNSLSGVNPDDGLGPVEMLVSLLRPKTVESKIISGAGEWSVREPRYADPAFC
CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCEEE
VMLEGSCVLRLDGYHPIELHAGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDP
EEECCCEEEEECCCCEEEECCCCEEEECCCHHHHHCCCCCHHHHHHHHCCCCCHHCCCCC
DGPASMRMLGGYFRFERENAPLLAPLLPRIVLVRHDEPRASRLSRIVALISEETGSAAPS
CCCHHHHHHHHHHEEECCCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCHH
ELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
RAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAF
HHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
TTAFTRMTGTSPSAFARASV
HHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MRWRWLLRPNSLSGVNPDDGLGPVEMLVSLLRPKTVESKIISGAGEWSVREPRYADPAFC
CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCEEE
VMLEGSCVLRLDGYHPIELHAGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDP
EEECCCEEEEECCCCEEEECCCCEEEECCCHHHHHCCCCCHHHHHHHHCCCCCHHCCCCC
DGPASMRMLGGYFRFERENAPLLAPLLPRIVLVRHDEPRASRLSRIVALISEETGSAAPS
CCCHHHHHHHHHHEEECCCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCHH
ELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
RAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAF
HHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
TTAFTRMTGTSPSAFARASV
HHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]