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The map label for this gene is yagI [H]

Identifier: 108797295

GI number: 108797295

Start: 352641

End: 353567

Strand: Reverse

Name: yagI [H]

Synonym: Mmcs_0315

Alternate gene names: 108797295

Gene position: 353567-352641 (Counterclockwise)

Preceding gene: 108797296

Following gene: 108797294

Centisome position: 6.2

GC content: 70.98

Gene sequence:

>927_bases
GTGATACAAACAGGCATATTCCTAATAGGAATATGCCTGATCTGCACTTCAGCCCCAGGAGGCGCCATGACGGTCCAACC
AGGACTGGCTCCAGTCAGCCCGGAATCCACCCCCAGCGCGGTCATCGACCGGGTCTCGCTGGTGCTCGATGCCTTCGACG
GCCCCGGCCGGCTGACGCTGGCCCAGATCGTCCGGCGCACGGGGCTGCCCCGGTCGTCGGCGCACCGCATGCTCGAACGC
CTCGTGCAACTGCGCTGGCTGCGCCGCAACGGCCGCGACTACGAGCTGGGCATGCGGTTGGTCGAACTCGGGTCGCTGGC
CGTACACCAGGACCGGCTGCACCGGGCGGCGACGCCGCTGCTGCACGATCTGCACCGCGCGACGGGTCTGGTGGTGCACC
TCGCCGTCCTGGACGGCGCCGACGTGGTCTACCTCGAGAAGATCGGCGACCGGATGGTGGCCGCACTCCCCAGCCGGGTC
GGCGGCCGCCAGCCCGCGCACTGCACCGCGATCGGCAAGGCGCTGCTCGCCTACAACGCGGATGCGTGCGACGACGTCGA
CCTCGACAATCGCCGGACCAAGTACTCCATCGGCAGCGCCGCCCAGCTGGCGAACGAACTCGCCAAGACCCGCGCCCACG
GTGTCGCCTTCGACCGCGAGGAGTCGCTACCCGGGTTCGGCTGTGTCGCAGCGCCGATCGGCGCACCCGGCGAAGCCGTC
GCGGCGCTGTCCGTGTGCGGGCCGATGGGCCGCATGGTCTTCGACCAACGTCTCGCCGCGCCGGTCCGGATGACCGCGAT
GGGCGTGTGGCGCAACGTCGAAGGCGGGCCGCAGCGCGTCGCGCCGACCCTGCAGCAGGTGCGGCCACTGCGCAGCGGCC
CCACGCCGCGTCCGGCCCACGAGTCGACCGCCCTGCAGCTCGCATGA

Upstream 100 bases:

>100_bases
CGGACCATGGCCGTGACCCAGCCGGGTCACGGCCATATCGGCGTGGCCGAATGTGGGCTGAATCCAGTTTCAAGATCCAA
GTGACACAGCCCACTCGGTT

Downstream 100 bases:

>100_bases
CCGGGGCGCTCGACCCGCAGATCGCCGACCTCATCGAGGGGCTGGACCGCGGCTTCCCACCGGTGCAGACCATGACCGGC
GCGCAGGCACGGGCCACGAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MIQTGIFLIGICLICTSAPGGAMTVQPGLAPVSPESTPSAVIDRVSLVLDAFDGPGRLTLAQIVRRTGLPRSSAHRMLER
LVQLRWLRRNGRDYELGMRLVELGSLAVHQDRLHRAATPLLHDLHRATGLVVHLAVLDGADVVYLEKIGDRMVAALPSRV
GGRQPAHCTAIGKALLAYNADACDDVDLDNRRTKYSIGSAAQLANELAKTRAHGVAFDREESLPGFGCVAAPIGAPGEAV
AALSVCGPMGRMVFDQRLAAPVRMTAMGVWRNVEGGPQRVAPTLQQVRPLRSGPTPRPAHESTALQLA

Sequences:

>Translated_308_residues
MIQTGIFLIGICLICTSAPGGAMTVQPGLAPVSPESTPSAVIDRVSLVLDAFDGPGRLTLAQIVRRTGLPRSSAHRMLER
LVQLRWLRRNGRDYELGMRLVELGSLAVHQDRLHRAATPLLHDLHRATGLVVHLAVLDGADVVYLEKIGDRMVAALPSRV
GGRQPAHCTAIGKALLAYNADACDDVDLDNRRTKYSIGSAAQLANELAKTRAHGVAFDREESLPGFGCVAAPIGAPGEAV
AALSVCGPMGRMVFDQRLAAPVRMTAMGVWRNVEGGPQRVAPTLQQVRPLRSGPTPRPAHESTALQLA
>Mature_308_residues
MIQTGIFLIGICLICTSAPGGAMTVQPGLAPVSPESTPSAVIDRVSLVLDAFDGPGRLTLAQIVRRTGLPRSSAHRMLER
LVQLRWLRRNGRDYELGMRLVELGSLAVHQDRLHRAATPLLHDLHRATGLVVHLAVLDGADVVYLEKIGDRMVAALPSRV
GGRQPAHCTAIGKALLAYNADACDDVDLDNRRTKYSIGSAAQLANELAKTRAHGVAFDREESLPGFGCVAAPIGAPGEAV
AALSVCGPMGRMVFDQRLAAPVRMTAMGVWRNVEGGPQRVAPTLQQVRPLRSGPTPRPAHESTALQLA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=226, Percent_Identity=35.3982300884956, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788131, Length=239, Percent_Identity=30.5439330543933, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1788581, Length=219, Percent_Identity=30.5936073059361, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082359, Length=214, Percent_Identity=28.9719626168224, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790752, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789999, Length=230, Percent_Identity=25.2173913043478, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786715, Length=208, Percent_Identity=24.0384615384615, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 32850; Mature: 32850

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTGIFLIGICLICTSAPGGAMTVQPGLAPVSPESTPSAVIDRVSLVLDAFDGPGRLTL
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
AQIVRRTGLPRSSAHRMLERLVQLRWLRRNGRDYELGMRLVELGSLAVHQDRLHRAATPL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHDLHRATGLVVHLAVLDGADVVYLEKIGDRMVAALPSRVGGRQPAHCTAIGKALLAYNA
HHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
DACDDVDLDNRRTKYSIGSAAQLANELAKTRAHGVAFDREESLPGFGCVAAPIGAPGEAV
CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHH
AALSVCGPMGRMVFDQRLAAPVRMTAMGVWRNVEGGPQRVAPTLQQVRPLRSGPTPRPAH
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ESTALQLA
CCCCEECC
>Mature Secondary Structure
MIQTGIFLIGICLICTSAPGGAMTVQPGLAPVSPESTPSAVIDRVSLVLDAFDGPGRLTL
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
AQIVRRTGLPRSSAHRMLERLVQLRWLRRNGRDYELGMRLVELGSLAVHQDRLHRAATPL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHDLHRATGLVVHLAVLDGADVVYLEKIGDRMVAALPSRVGGRQPAHCTAIGKALLAYNA
HHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
DACDDVDLDNRRTKYSIGSAAQLANELAKTRAHGVAFDREESLPGFGCVAAPIGAPGEAV
CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHH
AALSVCGPMGRMVFDQRLAAPVRMTAMGVWRNVEGGPQRVAPTLQQVRPLRSGPTPRPAH
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ESTALQLA
CCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]