| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is ifcA [H]
Identifier: 108797282
GI number: 108797282
Start: 339151
End: 340755
Strand: Reverse
Name: ifcA [H]
Synonym: Mmcs_0302
Alternate gene names: 108797282
Gene position: 340755-339151 (Counterclockwise)
Preceding gene: 108797283
Following gene: 108797281
Centisome position: 5.97
GC content: 68.72
Gene sequence:
>1605_bases ATGAACTTCGGTGCCATGAACTACGACGTCATCGTCGTCGGATTCGGCGCAGCCGGTGCGGCAGCCGCGATCGAGGCCGC CGACCGTGGCGCACGCGTGCTCGTGCTCGACCGCGGTTACGGCGGCGGTGCGACGGCGTTGTCCGGCGGGATCGTCTACG CCGGCGGCGGCACCGCCGAACAGCACGCCGGCGGCTACCACGACAGCGTCGAGGACATGCGGGCCTACCTCGAGTCCGAA GTCGGCGACTCCGTGTCCGGCGAGACACTGGACCGGTTCTGCCGGCAGAGCCCGGCGATGATCGAGTGGCTCAAGGCGCA GGGGGTCGAGTTCCGCGGCGGCGAGGTGCCCACCTACAAGACCTCGTATCCGACCGACGACTTCTACCTGTACTACTCCG GCAACGAGAAGGCCTATCCGTACGCAGGCCGCGCCCGGCCGGTACCGCGCGGCCACCGCGTCCTCGCGCGCGGAATGAGT TCCGGCAAGGTCCTGTTCGACCGCCTCGCCCGATCGGCGAGACACAAAGGCGTGGAATTCATCCCCCTGGCCCAGGTGCA CAGCCTCATCCAGGATGACGACGGCCGCATCGCCGGTGTCCGCTACCGCGCGTTGGATCCGGCGCACCCGAACGCGCGCA AGCACAAGGTGCTGACCAAGCTCACCGGGAAGGCGGGCACCTGGATGCCCGGACTGGTCGAGGGCCTCGTCGCGCGCGCG GAGGAGATGCGCACCGGTGCTTCCGTGGACGCGGAGGCCCGCGCACCCGCGGTGATCCTCGCGGCGGGAGGCTTCGTCCA CAACCGAGAGTGGATGCAGGCCCACGCACCGCAGTTCATGAAGGTGTCCCCGCTGGGAACCGTCGGCGACGACGGCACCG GCATAGCGCTGGGGCTCGCCGCCGGCGGGGTGACCGGCAAGATGGACAATGTGACGGCCTGGCGATTCCTCTCGCCGCCG AGCGCGTTCCTCGAGGGGCTCACCGTCGGGGCGGATGGACGGCGCATCGCCAACGAGGACCTCTACGGCGCCACCCACGG CAACGTGCTGATGCGTGACTTCGGTGGCACCGGATGGGCGATCTACGACGCGCAAACGTGGCGGAAGGTGAAAAGCCAGA TCCGCACCCAGACCCAGATCTTCCAACGCCTGCAGCTGATCTACCTGTTCACGATCGGCCACAAGAAGGCCGCCTCGATC GAGGACCTCGCCGCCGAGAACGGGATCGACGCCGAAGGCCTTCGACGCACGGTCGACGAGTACCACCGCGGCCTCGACAA TGGTGCCGGGGATCCCGCACACAAGGACCCCGAACTCTGTCCGCCGCTGCTCACCCCGCCGTTCTACTCGATCGACATCT CGGCCGACTCCTCGATGTTCTTCCCGATTCCCGGCCTGACCCTCGGCGGCCTGCTGGTCGACGAGAGCACCGGCGAAATA CTGGGTGCCGACGGGGAATCGGTGCCGCGTCTGTACGCCGCCGGACGCAACGCGGTGGGCGTGTGCTCCAAGAGCTACGT CAGCGGGCTGTCCCTCGCCGACTGCATCTTCAGCGGTCGGCGCGCGGGCGCGCACGCCGCGGACGGATTGGGACAGCCAC GGTGA
Upstream 100 bases:
>100_bases CCGACGCACACAGCCTCGACGTGCTGGCGCGGGTGTCGGCGAAACGCACCACCAGGTTGGTCGCCAAACAGATCAAGTCG GTGCTGTGAACTACGGTGCC
Downstream 100 bases:
>100_bases CCGTGCCCGGGCTCGATCCCGACGCCGCCGCGCGTGTCGCCTCGTTCGGCGCCATCCCACCGATGCGCGAGCGTGGGCTG GACGCGGTGCGGCGCGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MNFGAMNYDVIVVGFGAAGAAAAIEAADRGARVLVLDRGYGGGATALSGGIVYAGGGTAEQHAGGYHDSVEDMRAYLESE VGDSVSGETLDRFCRQSPAMIEWLKAQGVEFRGGEVPTYKTSYPTDDFYLYYSGNEKAYPYAGRARPVPRGHRVLARGMS SGKVLFDRLARSARHKGVEFIPLAQVHSLIQDDDGRIAGVRYRALDPAHPNARKHKVLTKLTGKAGTWMPGLVEGLVARA EEMRTGASVDAEARAPAVILAAGGFVHNREWMQAHAPQFMKVSPLGTVGDDGTGIALGLAAGGVTGKMDNVTAWRFLSPP SAFLEGLTVGADGRRIANEDLYGATHGNVLMRDFGGTGWAIYDAQTWRKVKSQIRTQTQIFQRLQLIYLFTIGHKKAASI EDLAAENGIDAEGLRRTVDEYHRGLDNGAGDPAHKDPELCPPLLTPPFYSIDISADSSMFFPIPGLTLGGLLVDESTGEI LGADGESVPRLYAAGRNAVGVCSKSYVSGLSLADCIFSGRRAGAHAADGLGQPR
Sequences:
>Translated_534_residues MNFGAMNYDVIVVGFGAAGAAAAIEAADRGARVLVLDRGYGGGATALSGGIVYAGGGTAEQHAGGYHDSVEDMRAYLESE VGDSVSGETLDRFCRQSPAMIEWLKAQGVEFRGGEVPTYKTSYPTDDFYLYYSGNEKAYPYAGRARPVPRGHRVLARGMS SGKVLFDRLARSARHKGVEFIPLAQVHSLIQDDDGRIAGVRYRALDPAHPNARKHKVLTKLTGKAGTWMPGLVEGLVARA EEMRTGASVDAEARAPAVILAAGGFVHNREWMQAHAPQFMKVSPLGTVGDDGTGIALGLAAGGVTGKMDNVTAWRFLSPP SAFLEGLTVGADGRRIANEDLYGATHGNVLMRDFGGTGWAIYDAQTWRKVKSQIRTQTQIFQRLQLIYLFTIGHKKAASI EDLAAENGIDAEGLRRTVDEYHRGLDNGAGDPAHKDPELCPPLLTPPFYSIDISADSSMFFPIPGLTLGGLLVDESTGEI LGADGESVPRLYAAGRNAVGVCSKSYVSGLSLADCIFSGRRAGAHAADGLGQPR >Mature_534_residues MNFGAMNYDVIVVGFGAAGAAAAIEAADRGARVLVLDRGYGGGATALSGGIVYAGGGTAEQHAGGYHDSVEDMRAYLESE VGDSVSGETLDRFCRQSPAMIEWLKAQGVEFRGGEVPTYKTSYPTDDFYLYYSGNEKAYPYAGRARPVPRGHRVLARGMS SGKVLFDRLARSARHKGVEFIPLAQVHSLIQDDDGRIAGVRYRALDPAHPNARKHKVLTKLTGKAGTWMPGLVEGLVARA EEMRTGASVDAEARAPAVILAAGGFVHNREWMQAHAPQFMKVSPLGTVGDDGTGIALGLAAGGVTGKMDNVTAWRFLSPP SAFLEGLTVGADGRRIANEDLYGATHGNVLMRDFGGTGWAIYDAQTWRKVKSQIRTQTQIFQRLQLIYLFTIGHKKAASI EDLAAENGIDAEGLRRTVDEYHRGLDNGAGDPAHKDPELCPPLLTPPFYSIDISADSSMFFPIPGLTLGGLLVDESTGEI LGADGESVPRLYAAGRNAVGVCSKSYVSGLSLADCIFSGRRAGAHAADGLGQPR
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=365, Percent_Identity=24.6575342465753, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 56791; Mature: 56791
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFGAMNYDVIVVGFGAAGAAAAIEAADRGARVLVLDRGYGGGATALSGGIVYAGGGTAE CCCCCEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCEEEECCCCCH QHAGGYHDSVEDMRAYLESEVGDSVSGETLDRFCRQSPAMIEWLKAQGVEFRGGEVPTYK HCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEECCCCCCCCC TSYPTDDFYLYYSGNEKAYPYAGRARPVPRGHRVLARGMSSGKVLFDRLARSARHKGVEF CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEE IPLAQVHSLIQDDDGRIAGVRYRALDPAHPNARKHKVLTKLTGKAGTWMPGLVEGLVARA EEHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH EEMRTGASVDAEARAPAVILAAGGFVHNREWMQAHAPQFMKVSPLGTVGDDGTGIALGLA HHHHCCCCCCCCCCCCEEEEECCCCEECHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEE AGGVTGKMDNVTAWRFLSPPSAFLEGLTVGADGRRIANEDLYGATHGNVLMRDFGGTGWA CCCCCCCCCCCEEEEEECCHHHHHCCEEECCCCCEECCCCCCCCCCCCEEEEECCCCCEE IYDAQTWRKVKSQIRTQTQIFQRLQLIYLFTIGHKKAASIEDLAAENGIDAEGLRRTVDE EECHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHH YHRGLDNGAGDPAHKDPELCPPLLTPPFYSIDISADSSMFFPIPGLTLGGLLVDESTGEI HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCEECCEEEECCCCCE LGADGESVPRLYAAGRNAVGVCSKSYVSGLSLADCIFSGRRAGAHAADGLGQPR ECCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHCCCCCCC >Mature Secondary Structure MNFGAMNYDVIVVGFGAAGAAAAIEAADRGARVLVLDRGYGGGATALSGGIVYAGGGTAE CCCCCEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCEEEECCCCCH QHAGGYHDSVEDMRAYLESEVGDSVSGETLDRFCRQSPAMIEWLKAQGVEFRGGEVPTYK HCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEECCCCCCCCC TSYPTDDFYLYYSGNEKAYPYAGRARPVPRGHRVLARGMSSGKVLFDRLARSARHKGVEF CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEE IPLAQVHSLIQDDDGRIAGVRYRALDPAHPNARKHKVLTKLTGKAGTWMPGLVEGLVARA EEHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH EEMRTGASVDAEARAPAVILAAGGFVHNREWMQAHAPQFMKVSPLGTVGDDGTGIALGLA HHHHCCCCCCCCCCCCEEEEECCCCEECHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEE AGGVTGKMDNVTAWRFLSPPSAFLEGLTVGADGRRIANEDLYGATHGNVLMRDFGGTGWA CCCCCCCCCCCEEEEEECCHHHHHCCEEECCCCCEECCCCCCCCCCCCEEEEECCCCCEE IYDAQTWRKVKSQIRTQTQIFQRLQLIYLFTIGHKKAASIEDLAAENGIDAEGLRRTVDE EECHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHH YHRGLDNGAGDPAHKDPELCPPLLTPPFYSIDISADSSMFFPIPGLTLGGLLVDESTGEI HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCEECCEEEECCCCCE LGADGESVPRLYAAGRNAVGVCSKSYVSGLSLADCIFSGRRAGAHAADGLGQPR ECCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]