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The map label for this gene is ycdM [C]

Identifier: 108797271

GI number: 108797271

Start: 328742

End: 329593

Strand: Direct

Name: ycdM [C]

Synonym: Mmcs_0291

Alternate gene names: 108797271

Gene position: 328742-329593 (Clockwise)

Preceding gene: 108797270

Following gene: 108797274

Centisome position: 5.76

GC content: 72.65

Gene sequence:

>852_bases
ATGCGAATCGGTGTGTCCACGCCAGTGGTCGTCCAGGTGCCCGGGGTGGCCGCGGAGTGGGAGCGGGACGCCGGGATCGA
GGACCTGCGGACGGTCGCCCAGGCGGCGGATTCCCTCGGCTTCGAGTACCTGACCTGCTCCGAGCATGTCGCCGTGCCCG
CCGCCGACGCGCTGGCCCGCGGCGCCGTGTACTGGGATCCGCTCGCCACGCTGGGCTTCCTGGCCGCGTGTACGTCACGC
ATCCGGCTGGCGACGTCGGTGATCGTGCTCGGCTACCACCACCCGCTGGAGATCGCCAAGCGGTACGGCACCCTCGACCG
GGTCAGCGGCGGCCGGTTGACGCTGGGCGTCGGCGTGGGATCCCTGGCCGCGGAGTTCGAGCTCCTCGGCGCGCAGTTCG
GTGACCGCGGCCGCCGCGCCGACGACGCGCTGCGCGCGCTCCGCGCCTCCCTGTCGACGACTCGACCGGCCTACGACGGC
GAGTTCTACCAATACGATTCCGTGGTGGTCGAACCGTGCGCGGCGCAGCCGCGGGTGCCCATCTGGGTCGGTGGACGCAC
CCGGCGATCACTGCGCCGGGCAGTGGAATTGGCCGACGGCTGGATGCCCTTCGGGCTGTCGGCCGATCGGCTCTCGGAGC
TGTTGTCGACGGTGGACGTCCCGGCCGACTTCGACATCGTCCTGCCGGTCGCGCCGCTCGACCCCTCCGGGGACCGGGAT
CGGGCCGCGCGGCGGCTGCGCGCACTCGACGATCTCGGGGCGACGGCGGTCACGTGCACACTCGCGGCGACCTCCGCCGG
TCACTATTGCGATCAGCTCGAGGCGCTGCGCGCCGTCGCCGAGGACCTCTGA

Upstream 100 bases:

>100_bases
TCGGGAACGCTGTCCTCGTCTTTCGCCACCGGATGTGACGGCGCGCCCGGTGGGACCCTGACCTACCCGTTCCGGCTGGT
TCGCCTGTAGAAAGCACTGC

Downstream 100 bases:

>100_bases
CCGTCTCCGGTCACATGTGGGTGCCGCCGTCGACCCGCACCTCGGTGCCGGTGACGAAGAACGCGTCGGCCGACCCGAGC
ATCGCCACCACCGAGGCGAC

Product: luciferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRIGVSTPVVVQVPGVAAEWERDAGIEDLRTVAQAADSLGFEYLTCSEHVAVPAADALARGAVYWDPLATLGFLAACTSR
IRLATSVIVLGYHHPLEIAKRYGTLDRVSGGRLTLGVGVGSLAAEFELLGAQFGDRGRRADDALRALRASLSTTRPAYDG
EFYQYDSVVVEPCAAQPRVPIWVGGRTRRSLRRAVELADGWMPFGLSADRLSELLSTVDVPADFDIVLPVAPLDPSGDRD
RAARRLRALDDLGATAVTCTLAATSAGHYCDQLEALRAVAEDL

Sequences:

>Translated_283_residues
MRIGVSTPVVVQVPGVAAEWERDAGIEDLRTVAQAADSLGFEYLTCSEHVAVPAADALARGAVYWDPLATLGFLAACTSR
IRLATSVIVLGYHHPLEIAKRYGTLDRVSGGRLTLGVGVGSLAAEFELLGAQFGDRGRRADDALRALRASLSTTRPAYDG
EFYQYDSVVVEPCAAQPRVPIWVGGRTRRSLRRAVELADGWMPFGLSADRLSELLSTVDVPADFDIVLPVAPLDPSGDRD
RAARRLRALDDLGATAVTCTLAATSAGHYCDQLEALRAVAEDL
>Mature_283_residues
MRIGVSTPVVVQVPGVAAEWERDAGIEDLRTVAQAADSLGFEYLTCSEHVAVPAADALARGAVYWDPLATLGFLAACTSR
IRLATSVIVLGYHHPLEIAKRYGTLDRVSGGRLTLGVGVGSLAAEFELLGAQFGDRGRRADDALRALRASLSTTRPAYDG
EFYQYDSVVVEPCAAQPRVPIWVGGRTRRSLRRAVELADGWMPFGLSADRLSELLSTVDVPADFDIVLPVAPLDPSGDRD
RAARRLRALDDLGATAVTCTLAATSAGHYCDQLEALRAVAEDL

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30263; Mature: 30263

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGVSTPVVVQVPGVAAEWERDAGIEDLRTVAQAADSLGFEYLTCSEHVAVPAADALAR
CCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHC
GAVYWDPLATLGFLAACTSRIRLATSVIVLGYHHPLEIAKRYGTLDRVSGGRLTLGVGVG
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCHHCCCCCEEEEEECCC
SLAAEFELLGAQFGDRGRRADDALRALRASLSTTRPAYDGEFYQYDSVVVEPCAAQPRVP
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCCCE
IWVGGRTRRSLRRAVELADGWMPFGLSADRLSELLSTVDVPADFDIVLPVAPLDPSGDRD
EEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
RAARRLRALDDLGATAVTCTLAATSAGHYCDQLEALRAVAEDL
HHHHHHHHHHHCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIGVSTPVVVQVPGVAAEWERDAGIEDLRTVAQAADSLGFEYLTCSEHVAVPAADALAR
CCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHC
GAVYWDPLATLGFLAACTSRIRLATSVIVLGYHHPLEIAKRYGTLDRVSGGRLTLGVGVG
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCHHCCCCCEEEEEECCC
SLAAEFELLGAQFGDRGRRADDALRALRASLSTTRPAYDGEFYQYDSVVVEPCAAQPRVP
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCCCE
IWVGGRTRRSLRRAVELADGWMPFGLSADRLSELLSTVDVPADFDIVLPVAPLDPSGDRD
EEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
RAARRLRALDDLGATAVTCTLAATSAGHYCDQLEALRAVAEDL
HHHHHHHHHHHCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]