| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is pheT [H]
Identifier: 108761050
GI number: 108761050
Start: 4190160
End: 4192607
Strand: Direct
Name: pheT [H]
Synonym: MXAN_3595
Alternate gene names: 108761050
Gene position: 4190160-4192607 (Clockwise)
Preceding gene: 108763246
Following gene: 108759809
Centisome position: 45.85
GC content: 70.75
Gene sequence:
>2448_bases GTGTTCCAGCCGATTGATGAAGAGGGTGGACCTGTGAAGATTTCGGTGAAGTGGCTGGGCGATTACGTGGCGCTGCCGCC GTCCGAGGACGAGCTGGCGCGCAAGCTGACCGCCGCGGGCCTGGAGATTGAGGGAATGGAGCGCCCCGCGGAAGCCCTTC GCGGCGTGGTGGTGGCGCAAATCAAGGAGTCCGTGCAGCACCCCAACGCGGACAAGCTGTCCGTCACGCAGGTGGACATC GGCGGGACGGCGCTGCTCCAGGTGGTGTGCGGCGCGAAGAACTTCAAGGTGGGCGACAAGGTGCCGCTGGCCACCGTGGG CGCGAAGCTGCCCAACGGCATGGACATCAAGCAGGCGGCGCTGCGCGGCGTGGACAGCTTCGGCATGCTCTGCTCGTCCA AGGAGCTGGGCCTGAGCGAGGAGTCCAGCGGCCTGCTCATCCTTCCGGCGGACACGCGCGTGGGCACGCCCATCGCGGAG GCCGTGGGGCTGGATGGCGTGGTGCTGGAGGTGAACGTCACGCCGAACCGCCCGGACGCGCTCAGCCACCTGGGCGTGGC GCGCGAGGTGAGCGTGGTGACGGGCTCCGCGTTGAAGGTGCCCCAGCCGAAGCCCGCGGAGTCGGGCACGCCCGCCGCCG AGCAGGTGAAGGTGCGCGTGGAGGCCCCGGACCGCTGCCCGCGCTACGTGGCGCGCGTGGTGGAGAACGTGAAGATTGGC CCGTCTCCGCAGTGGATGCAGGACCGGCTGAAGGCGGCCGGGGTGCGCGCCATCAACAACGTGGTGGATGTCACCAACTA CGTGAACCTGGAGTACGGGCAGCCGCTGCACGCCTTCGACCTGGAGAAGCTGGCCGGTCAGGAGATTGTCGTCCGTACGG CGACGCGCGGCGAGAAGCTCAAGACGCTGGACGGCAAGGACCGCGTCCTGGACGTGGATGACCTGGTCATCGCGGACAAG GACCGGGCGCAGGCCATCGCTGGCGTCATGGGCGGCGGCGACAGCGAGGTGACCGAGGGCACCCGGCGGCTGGTGCTGGA GTCGGCGAACTTCCAGGGTTCCACGGTGCGGCGTTCGTCGAAGCGGCACGGGCTGCACACGGAGGCATCGCACCGCTTCG AGCGCGGGGCGGACATGGACGCCGTGGTGCCGGCCATTGACCGGGCGGCACAGCTCATCGCGGAGCTGGCGGGGGGCACG GTGGCTCCTGGCCGCGTGGACGTGTACCCGGCGCCGAAGCCGCCTCGGAAGGTGACGCTGCGCTTCGCCCGGGTGGAGCA GGTGCTGGGCGTGGCCGTGGCGGAGAAGGAGGTCCGCCGCATCCTGGAGGCGCTGGGCTTCAAGGCGGTGGAGGAGGGGA CGGGGCAGGCGACGTACGAGGTGCCTCGGGCCCGTGTCGACGTGGAGCGCGAGGAGGACCTGTTGGAGGAGGTCGCGCGC ATCTACGGCTACGACAACATTCCGGCGACGCTCCCGCGGGGACTGGCCACGCTGGCCCCGGAGCCCGCGAATGCCGAGGC CGAGCGCCGCATGCGTCAGGCGCTGGCCGGGGCGGGCTTCGACGAGGTGGTGAACTACTCGTTCGTCGCGCCGCGCAGCC TGGAGGTGCTGGGTGGGGCGGAGAAGCCGGTGGCGCTGCTCAATCCATTGAGCACCGAGCAGTCGGTGATGCGCACCAGC CTGCTGCCGGGCCTGCTGGAGAACCTGTCCCGCAGCGTGCGGCACCAGGTGGAGGCGGTGGCCATCTACGAGACGGGCCG GGCCTACTTCCAGGACGCGGAAGGCGGGCAGGGGCAGCGTCCGGCGGCGCGCGAGGTGCCTCGCGTGGCGGGTCTGGTGT GGGGCCTGCGCGGTGGTGGCCGGAGCTGGACGCACAAGGATGCCCGCGCGGACTTCTACGACGCGAAGGCGGCGGTGGAG GGGCTACTGGGCGCACTCCGCGTGGAGGGCGTGACGTACGTGCCCGCGGGGCCAGCGGCGTACCACCCGAAGGCCGTGGC GCAGGTGAAGGCGGCGGACGGCACGGTGCTGGGCCACGTGGGCGAGGTGCACCCCCGGGTGGCGAAGGCGCTGGGCCTGC CGGACGGGGTGTTCGTCTTCGAGTTGGACACGGAGCCGCTGTACGCGGCCTCGAAGCTGGTGCCGGCGTACCGGTCGCTG CCGCGTTTCCCGGCGGTGCTGCGGGACCTGGCGGTGGTGGTGCCGCTGGAGTTGCCCAACGACGAGGTGCGTCGGGTGAT CCTGGAGGTGGGCAAGCCGCTGGTGGAGGACGCTCAGGTGTTCGACGTGTACACCGGTGAGCAGATTCCCCAGGGTCGGA AGAACTTGGCGTACGCGCTGCGCTACCGCTCGGCCGAGCGGACGCTGACCGATGTGGAGGTCAACGAGGCGCATCAGCGC ATCGTGGATGAGGTGAAGCAGCGGCTGGGGGCTGCCTTGCGCGCCTGA
Upstream 100 bases:
>100_bases ATGCTGCGCTACCGCATCGACGACCTGCGGATGATGTTCGAGAACGACGCGCGGTTCCTCGAGCAGTTCTGAGATTCCAG GGGGCCGCTGGTGGGCCCCC
Downstream 100 bases:
>100_bases ATTCCTGAATGAAGTCAGAGGGTTGACACGTCTTTGGGAAGGCTGCAACAGTGCCCGGCGTTCAGCCCCGAGGGCTTCCC GAGGATTCGCATGACGAAGG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MFQPIDEEGGPVKISVKWLGDYVALPPSEDELARKLTAAGLEIEGMERPAEALRGVVVAQIKESVQHPNADKLSVTQVDI GGTALLQVVCGAKNFKVGDKVPLATVGAKLPNGMDIKQAALRGVDSFGMLCSSKELGLSEESSGLLILPADTRVGTPIAE AVGLDGVVLEVNVTPNRPDALSHLGVAREVSVVTGSALKVPQPKPAESGTPAAEQVKVRVEAPDRCPRYVARVVENVKIG PSPQWMQDRLKAAGVRAINNVVDVTNYVNLEYGQPLHAFDLEKLAGQEIVVRTATRGEKLKTLDGKDRVLDVDDLVIADK DRAQAIAGVMGGGDSEVTEGTRRLVLESANFQGSTVRRSSKRHGLHTEASHRFERGADMDAVVPAIDRAAQLIAELAGGT VAPGRVDVYPAPKPPRKVTLRFARVEQVLGVAVAEKEVRRILEALGFKAVEEGTGQATYEVPRARVDVEREEDLLEEVAR IYGYDNIPATLPRGLATLAPEPANAEAERRMRQALAGAGFDEVVNYSFVAPRSLEVLGGAEKPVALLNPLSTEQSVMRTS LLPGLLENLSRSVRHQVEAVAIYETGRAYFQDAEGGQGQRPAAREVPRVAGLVWGLRGGGRSWTHKDARADFYDAKAAVE GLLGALRVEGVTYVPAGPAAYHPKAVAQVKAADGTVLGHVGEVHPRVAKALGLPDGVFVFELDTEPLYAASKLVPAYRSL PRFPAVLRDLAVVVPLELPNDEVRRVILEVGKPLVEDAQVFDVYTGEQIPQGRKNLAYALRYRSAERTLTDVEVNEAHQR IVDEVKQRLGAALRA
Sequences:
>Translated_815_residues MFQPIDEEGGPVKISVKWLGDYVALPPSEDELARKLTAAGLEIEGMERPAEALRGVVVAQIKESVQHPNADKLSVTQVDI GGTALLQVVCGAKNFKVGDKVPLATVGAKLPNGMDIKQAALRGVDSFGMLCSSKELGLSEESSGLLILPADTRVGTPIAE AVGLDGVVLEVNVTPNRPDALSHLGVAREVSVVTGSALKVPQPKPAESGTPAAEQVKVRVEAPDRCPRYVARVVENVKIG PSPQWMQDRLKAAGVRAINNVVDVTNYVNLEYGQPLHAFDLEKLAGQEIVVRTATRGEKLKTLDGKDRVLDVDDLVIADK DRAQAIAGVMGGGDSEVTEGTRRLVLESANFQGSTVRRSSKRHGLHTEASHRFERGADMDAVVPAIDRAAQLIAELAGGT VAPGRVDVYPAPKPPRKVTLRFARVEQVLGVAVAEKEVRRILEALGFKAVEEGTGQATYEVPRARVDVEREEDLLEEVAR IYGYDNIPATLPRGLATLAPEPANAEAERRMRQALAGAGFDEVVNYSFVAPRSLEVLGGAEKPVALLNPLSTEQSVMRTS LLPGLLENLSRSVRHQVEAVAIYETGRAYFQDAEGGQGQRPAAREVPRVAGLVWGLRGGGRSWTHKDARADFYDAKAAVE GLLGALRVEGVTYVPAGPAAYHPKAVAQVKAADGTVLGHVGEVHPRVAKALGLPDGVFVFELDTEPLYAASKLVPAYRSL PRFPAVLRDLAVVVPLELPNDEVRRVILEVGKPLVEDAQVFDVYTGEQIPQGRKNLAYALRYRSAERTLTDVEVNEAHQR IVDEVKQRLGAALRA >Mature_815_residues MFQPIDEEGGPVKISVKWLGDYVALPPSEDELARKLTAAGLEIEGMERPAEALRGVVVAQIKESVQHPNADKLSVTQVDI GGTALLQVVCGAKNFKVGDKVPLATVGAKLPNGMDIKQAALRGVDSFGMLCSSKELGLSEESSGLLILPADTRVGTPIAE AVGLDGVVLEVNVTPNRPDALSHLGVAREVSVVTGSALKVPQPKPAESGTPAAEQVKVRVEAPDRCPRYVARVVENVKIG PSPQWMQDRLKAAGVRAINNVVDVTNYVNLEYGQPLHAFDLEKLAGQEIVVRTATRGEKLKTLDGKDRVLDVDDLVIADK DRAQAIAGVMGGGDSEVTEGTRRLVLESANFQGSTVRRSSKRHGLHTEASHRFERGADMDAVVPAIDRAAQLIAELAGGT VAPGRVDVYPAPKPPRKVTLRFARVEQVLGVAVAEKEVRRILEALGFKAVEEGTGQATYEVPRARVDVEREEDLLEEVAR IYGYDNIPATLPRGLATLAPEPANAEAERRMRQALAGAGFDEVVNYSFVAPRSLEVLGGAEKPVALLNPLSTEQSVMRTS LLPGLLENLSRSVRHQVEAVAIYETGRAYFQDAEGGQGQRPAAREVPRVAGLVWGLRGGGRSWTHKDARADFYDAKAAVE GLLGALRVEGVTYVPAGPAAYHPKAVAQVKAADGTVLGHVGEVHPRVAKALGLPDGVFVFELDTEPLYAASKLVPAYRSL PRFPAVLRDLAVVVPLELPNDEVRRVILEVGKPLVEDAQVFDVYTGEQIPQGRKNLAYALRYRSAERTLTDVEVNEAHQR IVDEVKQRLGAALRA
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=399, Percent_Identity=22.8070175438596, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI1788006, Length=807, Percent_Identity=39.1573729863693, Blast_Score=513, Evalue=1e-146, Organism=Caenorhabditis elegans, GI17533403, Length=302, Percent_Identity=25.4966887417219, Blast_Score=86, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6323089, Length=407, Percent_Identity=22.8501228501229, Blast_Score=74, Evalue=7e-14,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 87580; Mature: 87580
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQPIDEEGGPVKISVKWLGDYVALPPSEDELARKLTAAGLEIEGMERPAEALRGVVVAQ CCCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHH IKESVQHPNADKLSVTQVDIGGTALLQVVCGAKNFKVGDKVPLATVGAKLPNGMDIKQAA HHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHH LRGVDSFGMLCSSKELGLSEESSGLLILPADTRVGTPIAEAVGLDGVVLEVNVTPNRPDA HHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCHH LSHLGVAREVSVVTGSALKVPQPKPAESGTPAAEQVKVRVEAPDRCPRYVARVVENVKIG HHHHCCHHEEEEEECCEEECCCCCCCCCCCCCHHEEEEEECCCCCCHHHHHHHHHCCCCC PSPQWMQDRLKAAGVRAINNVVDVTNYVNLEYGQPLHAFDLEKLAGQEIVVRTATRGEKL CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCE KTLDGKDRVLDVDDLVIADKDRAQAIAGVMGGGDSEVTEGTRRLVLESANFQGSTVRRSS ECCCCCCCEEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCHHHHHH KRHGLHTEASHRFERGADMDAVVPAIDRAAQLIAELAGGTVAPGRVDVYPAPKPPRKVTL HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH RFARVEQVLGVAVAEKEVRRILEALGFKAVEEGTGQATYEVPRARVDVEREEDLLEEVAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCHHCCCHHHHHHHHHHHH IYGYDNIPATLPRGLATLAPEPANAEAERRMRQALAGAGFDEVVNYSFVAPRSLEVLGGA HHCCCCCCCHHCCCHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEECCCCHHHHCCC EKPVALLNPLSTEQSVMRTSLLPGLLENLSRSVRHQVEAVAIYETGRAYFQDAEGGQGQR CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHEECCCCCCCCC PAAREVPRVAGLVWGLRGGGRSWTHKDARADFYDAKAAVEGLLGALRVEGVTYVPAGPAA CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCC YHPKAVAQVKAADGTVLGHVGEVHPRVAKALGLPDGVFVFELDTEPLYAASKLVPAYRSL CCCHHHHEEECCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCC PRFPAVLRDLAVVVPLELPNDEVRRVILEVGKPLVEDAQVFDVYTGEQIPQGRKNLAYAL CCHHHHHHHCEEEEEEECCCHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH RYRSAERTLTDVEVNEAHQRIVDEVKQRLGAALRA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFQPIDEEGGPVKISVKWLGDYVALPPSEDELARKLTAAGLEIEGMERPAEALRGVVVAQ CCCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHH IKESVQHPNADKLSVTQVDIGGTALLQVVCGAKNFKVGDKVPLATVGAKLPNGMDIKQAA HHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHH LRGVDSFGMLCSSKELGLSEESSGLLILPADTRVGTPIAEAVGLDGVVLEVNVTPNRPDA HHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCHH LSHLGVAREVSVVTGSALKVPQPKPAESGTPAAEQVKVRVEAPDRCPRYVARVVENVKIG HHHHCCHHEEEEEECCEEECCCCCCCCCCCCCHHEEEEEECCCCCCHHHHHHHHHCCCCC PSPQWMQDRLKAAGVRAINNVVDVTNYVNLEYGQPLHAFDLEKLAGQEIVVRTATRGEKL CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCE KTLDGKDRVLDVDDLVIADKDRAQAIAGVMGGGDSEVTEGTRRLVLESANFQGSTVRRSS ECCCCCCCEEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCHHHHHH KRHGLHTEASHRFERGADMDAVVPAIDRAAQLIAELAGGTVAPGRVDVYPAPKPPRKVTL HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH RFARVEQVLGVAVAEKEVRRILEALGFKAVEEGTGQATYEVPRARVDVEREEDLLEEVAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCHHCCCHHHHHHHHHHHH IYGYDNIPATLPRGLATLAPEPANAEAERRMRQALAGAGFDEVVNYSFVAPRSLEVLGGA HHCCCCCCCHHCCCHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEECCCCHHHHCCC EKPVALLNPLSTEQSVMRTSLLPGLLENLSRSVRHQVEAVAIYETGRAYFQDAEGGQGQR CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHEECCCCCCCCC PAAREVPRVAGLVWGLRGGGRSWTHKDARADFYDAKAAVEGLLGALRVEGVTYVPAGPAA CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCC YHPKAVAQVKAADGTVLGHVGEVHPRVAKALGLPDGVFVFELDTEPLYAASKLVPAYRSL CCCHHHHEEECCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCC PRFPAVLRDLAVVVPLELPNDEVRRVILEVGKPLVEDAQVFDVYTGEQIPQGRKNLAYAL CCHHHHHHHCEEEEEEECCCHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH RYRSAERTLTDVEVNEAHQRIVDEVKQRLGAALRA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA