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The map label for this gene is ihfA

Identifier: 108759809

GI number: 108759809

Start: 4192698

End: 4193087

Strand: Direct

Name: ihfA

Synonym: MXAN_3596

Alternate gene names: 108759809

Gene position: 4192698-4193087 (Clockwise)

Preceding gene: 108761050

Following gene: 108757769

Centisome position: 45.87

GC content: 65.64

Gene sequence:

>390_bases
ATGACGAAGGCGGACATCATCGAGGGTGTCTACGAGAAGGTCGGCTTCTCGAAGAAGGAGTCGGCCGAAATCGTGGAGCT
CGTGTTCGACACGCTCAAGGAGACCCTGGAGCGCGGGGACAAGATCAAGATCTCCGGGTTCGGCAACTTCCAGGTGCGCC
AGAAGAAGGCGCGCGTGGGCCGCAACCCGCAGACGGGCAAGGAGATCGAGATCTCGGCGCGCCGGGTGCTGACCTTCCGG
CCGAGCCAGGTGCTGAAGAGCGCCCTGAACGGTGAGGCGCCGCCGGAGGATCACGCGGAGATCGACGCCCGGGAGGAAGC
CGCCGCCGACGCGGCCGAGGCCCGTGGCGAGGACTTCGACGAAGAGGGAATGGAGGACATGGAAGGGTGA

Upstream 100 bases:

>100_bases
GCGCGCCTGAATTCCTGAATGAAGTCAGAGGGTTGACACGTCTTTGGGAAGGCTGCAACAGTGCCCGGCGTTCAGCCCCG
AGGGCTTCCCGAGGATTCGC

Downstream 100 bases:

>100_bases
GTTTTTTGGACGGTGCCCTGCTGCTCTTGCTTGACCTGAACGTCATGTGGGGGCATAAGGGCGCACCCTTTCACGGCAGC
AGCAGTGCCGGGGCGTAGCG

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVGRNPQTGKEIEISARRVLTFR
PSQVLKSALNGEAPPEDHAEIDAREEAAADAAEARGEDFDEEGMEDMEG

Sequences:

>Translated_129_residues
MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVGRNPQTGKEIEISARRVLTFR
PSQVLKSALNGEAPPEDHAEIDAREEAAADAAEARGEDFDEEGMEDMEG
>Mature_128_residues
TKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVGRNPQTGKEIEISARRVLTFRP
SQVLKSALNGEAPPEDHAEIDAREEAAADAAEARGEDFDEEGMEDMEG

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. It is necessary for normal cell growth and the production o

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=50, Blast_Score=106, Evalue=6e-25,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=38.8888888888889, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=39.3258426966292, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_MYXXA (Q9K4Q3)

Other databases:

- EMBL:   AJ297483
- ProteinModelPortal:   Q9K4Q3
- SMR:   Q9K4Q3
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 14300; Mature: 14169

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCC
RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPEDHAEIDAREEAAADAAEARGEDFD
CCCCCCCEEEHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
EEGMEDMEG
HHHHHHCCC
>Mature Secondary Structure 
TKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCC
RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPEDHAEIDAREEAAADAAEARGEDFD
CCCCCCCEEEHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
EEGMEDMEG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11133949