| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is bfmBAA [H]
Identifier: 108760073
GI number: 108760073
Start: 5696942
End: 5697952
Strand: Direct
Name: bfmBAA [H]
Synonym: MXAN_4564
Alternate gene names: 108760073
Gene position: 5696942-5697952 (Clockwise)
Preceding gene: 108761536
Following gene: 108757679
Centisome position: 62.33
GC content: 66.57
Gene sequence:
>1011_bases GTGTCTCGTCCCCGACTCATCAAAGAATCCTCAGAAGCGTCCGCGCCGCTCGAGCGGGAGCTGCTGGTCCGCATCCATGA CCTCATGGTGAAGACGCGCGTCCTCGAGGAGCGCCTCATCCAGATGTACAAGCAAGGCCACGGATACTTCTGGATTGGCG GCCCCGGCGAGGAGGCGTTCAACGTCTCCCTGGGCCTGCTCATGAAGAAGGGCCAGGGCCCCGACTTCGACTATCTGCAT GCGCACTACCGGCAGTCCGGCACCCTGCTCGCGCTGGGTGAGGAGCCCATCGGCTCCCTGCGGCAGATGAAGAACACGGC CACGGACCCGTATTCGGGCGGCCGCAACTTCGCGGGCCACTACTCCGCCCGGAAGTACAACGTGGCGCCGGTGTCCTCGC CCATCGAGGTCCAGTACGCCATCGCCCCGGGCACGGCCATGGTGCAGAAGCGCCACGGCGGTGACGGCATCACCATCGTC ACCGGTGGCGACGCCGGCACGGCCGAGGGCGATTTCGCCTCGTGCCTGGTGTGGAGCAGCCGCCCCGCCAACCCGCTGCC CATCCTCATCATCGTCACCAACAACAAGTGGGGCATCTCCACGGCGGCGGAGGGCCAGCACGGCGAGCAGCGCATCAGCG ACCGCGGCAAGGCCTTTGGCATCCGCAGCAAGACCATCAACGGCAACGACGCCGTGGAGGCCTACACCGAGCTGCGCGAG GCCATGGCCTACGTGCGCACGGAGCGCAAGCCCTTCCTCCTGGAGGCCAACGTGTCGCGCCTGTACGGCCACTCGTCCGC CTCCGGAGCCAACTACGTGAGCAACGAAGTCGACTGCCTCACGGACTTCGAGGCGAAGCTGGAGAAGGACGGCGTCCTGA CGCGAGAGCAGATGGACGCGCTGCGCAACAGCTACACCGAGGAGATGGCCGCCGCCGCCCGACAGGTGCGCGACGAGCCA CAGCCCGACCCCGAATCCATCTGGAAGCACATCTACGCGGAGGACAAGTAA
Upstream 100 bases:
>100_bases TCTCCGCCTGACGTCCGGCAGGCGGCCCATCAACTGCCTTGAGCGGGAGGCACGTATCCGGGTTATAGGGGCGTCCCCTC CAGCCAGAGGAAGGTCGCGC
Downstream 100 bases:
>100_bases CCCATGGCGAACATGGCACAGGCCATCCGCATGGCCCTGCACTACGCCGAGGAGCACCTGGGCGTCACCGACATCTTCGG CGAGGACGTGGGCGCCCCCC
Product: 2-oxoisovalerate dehydrogenase complex, E1 component subunit alpha
Products: NA
Alternate protein names: Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain; BCKDH E1-alpha [H]
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MSRPRLIKESSEASAPLERELLVRIHDLMVKTRVLEERLIQMYKQGHGYFWIGGPGEEAFNVSLGLLMKKGQGPDFDYLH AHYRQSGTLLALGEEPIGSLRQMKNTATDPYSGGRNFAGHYSARKYNVAPVSSPIEVQYAIAPGTAMVQKRHGGDGITIV TGGDAGTAEGDFASCLVWSSRPANPLPILIIVTNNKWGISTAAEGQHGEQRISDRGKAFGIRSKTINGNDAVEAYTELRE AMAYVRTERKPFLLEANVSRLYGHSSASGANYVSNEVDCLTDFEAKLEKDGVLTREQMDALRNSYTEEMAAAARQVRDEP QPDPESIWKHIYAEDK
Sequences:
>Translated_336_residues MSRPRLIKESSEASAPLERELLVRIHDLMVKTRVLEERLIQMYKQGHGYFWIGGPGEEAFNVSLGLLMKKGQGPDFDYLH AHYRQSGTLLALGEEPIGSLRQMKNTATDPYSGGRNFAGHYSARKYNVAPVSSPIEVQYAIAPGTAMVQKRHGGDGITIV TGGDAGTAEGDFASCLVWSSRPANPLPILIIVTNNKWGISTAAEGQHGEQRISDRGKAFGIRSKTINGNDAVEAYTELRE AMAYVRTERKPFLLEANVSRLYGHSSASGANYVSNEVDCLTDFEAKLEKDGVLTREQMDALRNSYTEEMAAAARQVRDEP QPDPESIWKHIYAEDK >Mature_335_residues SRPRLIKESSEASAPLERELLVRIHDLMVKTRVLEERLIQMYKQGHGYFWIGGPGEEAFNVSLGLLMKKGQGPDFDYLHA HYRQSGTLLALGEEPIGSLRQMKNTATDPYSGGRNFAGHYSARKYNVAPVSSPIEVQYAIAPGTAMVQKRHGGDGITIVT GGDAGTAEGDFASCLVWSSRPANPLPILIIVTNNKWGISTAAEGQHGEQRISDRGKAFGIRSKTINGNDAVEAYTELREA MAYVRTERKPFLLEANVSRLYGHSSASGANYVSNEVDCLTDFEAKLEKDGVLTREQMDALRNSYTEEMAAAARQVRDEPQ PDPESIWKHIYAEDK
Specific function: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components:branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltran
COG id: COG1071
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BCKDHA family [H]
Homologues:
Organism=Homo sapiens, GI11386135, Length=333, Percent_Identity=24.9249249249249, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI258645172, Length=333, Percent_Identity=24.9249249249249, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI4885543, Length=346, Percent_Identity=23.6994219653179, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI291084742, Length=341, Percent_Identity=23.4604105571848, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4505685, Length=341, Percent_Identity=23.4604105571848, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI291084744, Length=347, Percent_Identity=23.0547550432277, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI86563357, Length=282, Percent_Identity=27.3049645390071, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI86563355, Length=282, Percent_Identity=27.3049645390071, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21355903, Length=335, Percent_Identity=24.4776119402985, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24639744, Length=347, Percent_Identity=21.3256484149856, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28571106, Length=347, Percent_Identity=21.3256484149856, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24639740, Length=347, Percent_Identity=21.3256484149856, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001017 [H]
Pfam domain/function: PF00676 E1_dh [H]
EC number: =1.2.4.4 [H]
Molecular weight: Translated: 37106; Mature: 36975
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPRLIKESSEASAPLERELLVRIHDLMVKTRVLEERLIQMYKQGHGYFWIGGPGEEAF CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH NVSLGLLMKKGQGPDFDYLHAHYRQSGTLLALGEEPIGSLRQMKNTATDPYSGGRNFAGH EEEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC YSARKYNVAPVSSPIEVQYAIAPGTAMVQKRHGGDGITIVTGGDAGTAEGDFASCLVWSS CCCCEEECCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC RPANPLPILIIVTNNKWGISTAAEGQHGEQRISDRGKAFGIRSKTINGNDAVEAYTELRE CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH AMAYVRTERKPFLLEANVSRLYGHSSASGANYVSNEVDCLTDFEAKLEKDGVLTREQMDA HHHHHHCCCCCEEEECCHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHH LRNSYTEEMAAAARQVRDEPQPDPESIWKHIYAEDK HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure SRPRLIKESSEASAPLERELLVRIHDLMVKTRVLEERLIQMYKQGHGYFWIGGPGEEAF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH NVSLGLLMKKGQGPDFDYLHAHYRQSGTLLALGEEPIGSLRQMKNTATDPYSGGRNFAGH EEEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC YSARKYNVAPVSSPIEVQYAIAPGTAMVQKRHGGDGITIVTGGDAGTAEGDFASCLVWSS CCCCEEECCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC RPANPLPILIIVTNNKWGISTAAEGQHGEQRISDRGKAFGIRSKTINGNDAVEAYTELRE CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH AMAYVRTERKPFLLEANVSRLYGHSSASGANYVSNEVDCLTDFEAKLEKDGVLTREQMDA HHHHHHCCCCCEEEECCHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHH LRNSYTEEMAAAARQVRDEPQPDPESIWKHIYAEDK HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8504804; 8969508; 9384377 [H]