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The map label for this gene is exbD [H]

Identifier: 108759585

GI number: 108759585

Start: 5852923

End: 5853375

Strand: Direct

Name: exbD [H]

Synonym: MXAN_4670

Alternate gene names: 108759585

Gene position: 5852923-5853375 (Clockwise)

Preceding gene: 108762277

Following gene: 108759061

Centisome position: 64.04

GC content: 67.77

Gene sequence:

>453_bases
ATGGGCATGGGAAAGACTCCGGGCAGCGACGACGGCTCCGAGGACGGCGTCTTCGCTGAAATCAACATCACCCCGCTCAC
CGACATCTTCCTGGTGCTGCTCATCATCTTCATGGTGACCAGCTCCGTCATCGTGCAGCAGGGACCGGGCGGCGGCGCCA
AGGCCGGCCTCAAGGTGAACCTGCCCAAGGGCGGCGCCGCGGACGTCACCGCGCGCACCACGGACCTGTCGGTGGCGGTG
CTCGCGGACGGGCGCTTCATGCTGGCCGGCAACGTCGTCTCCCAGGACGAGCTGCAGCAGGCCTTCGATGACGCCAGGCA
GAAGGACGAAGAGACGGTGGTCATCGTCCAGGCCGACGAGGGCGTGCCCCACGGCACCGTGGTGCAGGTGATGGAGCTGG
CCAAGAAGGCCGGGCTCGCCCAGCTCGCCATCGGCGTGCGCGAAGGCGAATAG

Upstream 100 bases:

>100_bases
CGCCGGCCTGCCGCCGTCCGAGCCCATGCCTCCCGAGCCGCAGGCCGCCCCCGCCACGCGCACGGACGCACAGCCCGCCT
AGGCCGGAGGAGAACGCACC

Downstream 100 bases:

>100_bases
GCAACACCTCCCCGCTGGGAACACGAAGGCCACCCAGGGCAGCGCGCCCGGGTGGCCTTGATGCTTCAGGCGCCCCGCCT
TTCAGCGGGGCGCGGGCTCA

Product: biopolymer ExbD/TolR family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MGMGKTPGSDDGSEDGVFAEINITPLTDIFLVLLIIFMVTSSVIVQQGPGGGAKAGLKVNLPKGGAADVTARTTDLSVAV
LADGRFMLAGNVVSQDELQQAFDDARQKDEETVVIVQADEGVPHGTVVQVMELAKKAGLAQLAIGVREGE

Sequences:

>Translated_150_residues
MGMGKTPGSDDGSEDGVFAEINITPLTDIFLVLLIIFMVTSSVIVQQGPGGGAKAGLKVNLPKGGAADVTARTTDLSVAV
LADGRFMLAGNVVSQDELQQAFDDARQKDEETVVIVQADEGVPHGTVVQVMELAKKAGLAQLAIGVREGE
>Mature_149_residues
GMGKTPGSDDGSEDGVFAEINITPLTDIFLVLLIIFMVTSSVIVQQGPGGGAKAGLKVNLPKGGAADVTARTTDLSVAVL
ADGRFMLAGNVVSQDELQQAFDDARQKDEETVVIVQADEGVPHGTVVQVMELAKKAGLAQLAIGVREGE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=144, Percent_Identity=27.0833333333333, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15507; Mature: 15376

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMGKTPGSDDGSEDGVFAEINITPLTDIFLVLLIIFMVTSSVIVQQGPGGGAKAGLKVN
CCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEE
LPKGGAADVTARTTDLSVAVLADGRFMLAGNVVSQDELQQAFDDARQKDEETVVIVQADE
CCCCCCCCEEEECCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
GVPHGTVVQVMELAKKAGLAQLAIGVREGE
CCCCHHHHHHHHHHHHCCCEEEEEEEECCC
>Mature Secondary Structure 
GMGKTPGSDDGSEDGVFAEINITPLTDIFLVLLIIFMVTSSVIVQQGPGGGAKAGLKVN
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEE
LPKGGAADVTARTTDLSVAVLADGRFMLAGNVVSQDELQQAFDDARQKDEETVVIVQADE
CCCCCCCCEEEECCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
GVPHGTVVQVMELAKKAGLAQLAIGVREGE
CCCCHHHHHHHHHHHHCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]