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The map label for this gene is rpfG [H]

Identifier: 108759061

GI number: 108759061

Start: 5857851

End: 5858966

Strand: Direct

Name: rpfG [H]

Synonym: MXAN_4675

Alternate gene names: 108759061

Gene position: 5857851-5858966 (Clockwise)

Preceding gene: 108759585

Following gene: 108757803

Centisome position: 64.09

GC content: 69.44

Gene sequence:

>1116_bases
ATGGATCGCATCCTCGTCGTGGACGACGACGTCCTCATCCTGGCCGCCCTGTCACGCATCCTCCAGGCGGAGGGGTACGA
CGTCGTCACCCACAGCGACCCGGCGGTGGCCGCCCGGGAGGTCGGCTTCCAGGTCGTGCTGACGGACTTCATGATGCCGT
ACCTCAACGGCATCGAACTGCTCAGCGCCCTTCGGGAGAAGAACCCCAAGGCGGTGCGGCTGATGCTGACGGCGGCGGCG
GACTTCCGCACCGCCTCCGAAGCGGTCAACCGCGGCGAGGTCTTCCGGCTGCTGGGCAAGCCCTGGTCACTCAGCGACCT
GACGAACAGCGTCCGGCAGGCCTTCGCGCACTACCGCCTGGTGGACGCCAACGAGCGGCTGTCGCGCGAGGTCGCGGAGA
AGAACGCGGAGCTGGTGGCCATCAACCGCGACCTGGAGCGGCGGGTGGTGGAGCGCACCGCGGGGCTGCTCGACGGGCTC
ATCAGCGCCCTGGACTACCGCGATACGGAGACGCAGTGGCACTCGCGCCGCGTGTCGCTCTACTCCCGCCGGCTGGCCCA
GGAGGTGGGGATGACGGGCGCAGCGCTGGACGTGGTGGAGCAAGGCGCGCTGCTGCACGACATCGGGAAGATTGGCGTGC
GCGACTCCATCCTGCTCAAGCCCGGTCCGCTCACGCCGGAGGAATGGGTGGAGATGCGCAAGCACCCGGAGTTCGGCTAC
CGGATGCTGGCGAAGATGCCCTACCTGCACGAAGCGGCGCTCATCGTGCTCCAGCACCAGGAGCGGTGGGACGGCAAGGG
CTACCCGCAGAACCTGGCGGGCGAGGACATCGTCCTGGGCGCGCGCATCTTCTGCCTCGTGGACACGGTGGATGCGATCA
CGTCCGACCGCCCCTACCGCAAGGGCCGGCCCATGAGCGTGGCGCGGGATGAAATCCGCCGCTGCGCGGGCACCCAGTTC
GACCCGGCGCTGGCGGAGGCCTTCCTCAACATTCCGGAGACGGAGTGGCAGCGCATCCGCCAGGAAGTCGAGGCCTTGGA
AGCGGCGGAGAACGAGCGCTGGAACAGCGACCCGCTCGGTCCTCCCGCGCCCCTGGCCCGTGCCAGCGGCGCCTGA

Upstream 100 bases:

>100_bases
CATGGCTTAGAAGCCCATCACCTGCCTGGGGGGTCTTTTGGGGGCGCGTAGCGGCGTGTATAAAGCTGTACAAGCACGCT
GTCCTGGAGGCACCTCGGGC

Downstream 100 bases:

>100_bases
ATCGACGCTTCAGGGCGCCAGCTCCACCGCGCGCGCTTCGCGGATGACGTCCCCTTCCAGGAGGGCGTCAACCACGTCCA
TGCCGGACACCACCTCGCCA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MDRILVVDDDVLILAALSRILQAEGYDVVTHSDPAVAAREVGFQVVLTDFMMPYLNGIELLSALREKNPKAVRLMLTAAA
DFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQAFAHYRLVDANERLSREVAEKNAELVAINRDLERRVVERTAGLLDGL
ISALDYRDTETQWHSRRVSLYSRRLAQEVGMTGAALDVVEQGALLHDIGKIGVRDSILLKPGPLTPEEWVEMRKHPEFGY
RMLAKMPYLHEAALIVLQHQERWDGKGYPQNLAGEDIVLGARIFCLVDTVDAITSDRPYRKGRPMSVARDEIRRCAGTQF
DPALAEAFLNIPETEWQRIRQEVEALEAAENERWNSDPLGPPAPLARASGA

Sequences:

>Translated_371_residues
MDRILVVDDDVLILAALSRILQAEGYDVVTHSDPAVAAREVGFQVVLTDFMMPYLNGIELLSALREKNPKAVRLMLTAAA
DFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQAFAHYRLVDANERLSREVAEKNAELVAINRDLERRVVERTAGLLDGL
ISALDYRDTETQWHSRRVSLYSRRLAQEVGMTGAALDVVEQGALLHDIGKIGVRDSILLKPGPLTPEEWVEMRKHPEFGY
RMLAKMPYLHEAALIVLQHQERWDGKGYPQNLAGEDIVLGARIFCLVDTVDAITSDRPYRKGRPMSVARDEIRRCAGTQF
DPALAEAFLNIPETEWQRIRQEVEALEAAENERWNSDPLGPPAPLARASGA
>Mature_371_residues
MDRILVVDDDVLILAALSRILQAEGYDVVTHSDPAVAAREVGFQVVLTDFMMPYLNGIELLSALREKNPKAVRLMLTAAA
DFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQAFAHYRLVDANERLSREVAEKNAELVAINRDLERRVVERTAGLLDGL
ISALDYRDTETQWHSRRVSLYSRRLAQEVGMTGAALDVVEQGALLHDIGKIGVRDSILLKPGPLTPEEWVEMRKHPEFGY
RMLAKMPYLHEAALIVLQHQERWDGKGYPQNLAGEDIVLGARIFCLVDTVDAITSDRPYRKGRPMSVARDEIRRCAGTQF
DPALAEAFLNIPETEWQRIRQEVEALEAAENERWNSDPLGPPAPLARASGA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=123, Percent_Identity=34.1463414634146, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41572; Mature: 41572

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRILVVDDDVLILAALSRILQAEGYDVVTHSDPAVAAREVGFQVVLTDFMMPYLNGIEL
CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSALREKNPKAVRLMLTAAADFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQAFAHYRL
HHHHHHCCCCEEEEEEEHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
VDANERLSREVAEKNAELVAINRDLERRVVERTAGLLDGLISALDYRDTETQWHSRRVSL
ECCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YSRRLAQEVGMTGAALDVVEQGALLHDIGKIGVRDSILLKPGPLTPEEWVEMRKHPEFGY
HHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCHHH
RMLAKMPYLHEAALIVLQHQERWDGKGYPQNLAGEDIVLGARIFCLVDTVDAITSDRPYR
HHHHHCCHHHHHHHHEEECHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
KGRPMSVARDEIRRCAGTQFDPALAEAFLNIPETEWQRIRQEVEALEAAENERWNSDPLG
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPAPLARASGA
CCCCCCCCCCC
>Mature Secondary Structure
MDRILVVDDDVLILAALSRILQAEGYDVVTHSDPAVAAREVGFQVVLTDFMMPYLNGIEL
CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSALREKNPKAVRLMLTAAADFRTASEAVNRGEVFRLLGKPWSLSDLTNSVRQAFAHYRL
HHHHHHCCCCEEEEEEEHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
VDANERLSREVAEKNAELVAINRDLERRVVERTAGLLDGLISALDYRDTETQWHSRRVSL
ECCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YSRRLAQEVGMTGAALDVVEQGALLHDIGKIGVRDSILLKPGPLTPEEWVEMRKHPEFGY
HHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCHHH
RMLAKMPYLHEAALIVLQHQERWDGKGYPQNLAGEDIVLGARIFCLVDTVDAITSDRPYR
HHHHHCCHHHHHHHHEEECHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
KGRPMSVARDEIRRCAGTQFDPALAEAFLNIPETEWQRIRQEVEALEAAENERWNSDPLG
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPAPLARASGA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]