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The map label for this gene is lytT [H]

Identifier: 108758032

GI number: 108758032

Start: 1494828

End: 1495472

Strand: Reverse

Name: lytT [H]

Synonym: MXAN_1279

Alternate gene names: 108758032

Gene position: 1495472-1494828 (Counterclockwise)

Preceding gene: 108761283

Following gene: 108760323

Centisome position: 16.36

GC content: 71.32

Gene sequence:

>645_bases
GTGCGCGCGGGCGGCGTGGACGTGGTGCTGCTGGACATCCACATGCCCGGCCTCAGCGGCCTGGATGCCCTGGCCCTGCT
GCCGGAAGGCGGCCCGCGCGTCATCCTCTGCACCGCCCACGCCGAGCACGCCGTGCAGGCCTTCGAACATGGCGCGGTGG
ACTACGTGCTCAAGCCCGTGGAGCCCGCGCGCCTTCAGAAGGCCCTGGAGCGGGCACGCGCACGCGGTCCGGCCACATCA
CCCACGAGCACGGTCAGCACCCCACCGAAGCCACCTGGCTCGCCCGTCCGCGGCCTGGGCCGCCTGCCCATTCCCACGCG
GCAGGGCATCGTCCTGGTGGATCCCGAAGCCATCTCCCACGCGTCGCTGGAGGACGAGCTGGTGACCGTGTTCACCACGC
AGGGAGACTTCCTTACCGACTTCACCCTCAACGAGCTGGTGGAGAAGCTGCCGTCCGAGCACTTCCACCGCGTCCACCGC
CGCGCGCTGCTCAACCTCACGCACGTGGCGCGACTGGAGCCGCTGGACACAGGTGGCTACCTGGCGCGCACGCTGCGAGG
CCACGCGGTGGAGGTGAGCCGTCAGTCCGCGCGCGAGCTGCGGCGCATGTTGGGCCTGCGTCGCGGCGTCGAGGAAGAGG
GCTGA

Upstream 100 bases:

>100_bases
CGAACTGCTCGCCCGAAAGCGCCTGACGCGGCTGCTCGCGGCGCTCCCGGACACGGAGGTCTGCGGCGAGGCCTCGGACG
CGGATGGCGTCCTTTCCGCC

Downstream 100 bases:

>100_bases
AGAAAGACAAAGGCCCGCGCTCCGGTGCATCCGCGCGGGCCCGACTGCGGGTGACGACCTACTTCACGCGCACTTCGACG
CTGACGACCCGCTCACCCTC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRAGGVDVVLLDIHMPGLSGLDALALLPEGGPRVILCTAHAEHAVQAFEHGAVDYVLKPVEPARLQKALERARARGPATS
PTSTVSTPPKPPGSPVRGLGRLPIPTRQGIVLVDPEAISHASLEDELVTVFTTQGDFLTDFTLNELVEKLPSEHFHRVHR
RALLNLTHVARLEPLDTGGYLARTLRGHAVEVSRQSARELRRMLGLRRGVEEEG

Sequences:

>Translated_214_residues
MRAGGVDVVLLDIHMPGLSGLDALALLPEGGPRVILCTAHAEHAVQAFEHGAVDYVLKPVEPARLQKALERARARGPATS
PTSTVSTPPKPPGSPVRGLGRLPIPTRQGIVLVDPEAISHASLEDELVTVFTTQGDFLTDFTLNELVEKLPSEHFHRVHR
RALLNLTHVARLEPLDTGGYLARTLRGHAVEVSRQSARELRRMLGLRRGVEEEG
>Mature_214_residues
MRAGGVDVVLLDIHMPGLSGLDALALLPEGGPRVILCTAHAEHAVQAFEHGAVDYVLKPVEPARLQKALERARARGPATS
PTSTVSTPPKPPGSPVRGLGRLPIPTRQGIVLVDPEAISHASLEDELVTVFTTQGDFLTDFTLNELVEKLPSEHFHRVHR
RALLNLTHVARLEPLDTGGYLARTLRGHAVEVSRQSARELRRMLGLRRGVEEEG

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=214, Percent_Identity=28.5046728971963, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082052, Length=202, Percent_Identity=33.1683168316832, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23227; Mature: 23227

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGGVDVVLLDIHMPGLSGLDALALLPEGGPRVILCTAHAEHAVQAFEHGAVDYVLKPV
CCCCCEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEECCHHHHHHHHHCCCHHEEECCC
EPARLQKALERARARGPATSPTSTVSTPPKPPGSPVRGLGRLPIPTRQGIVLVDPEAISH
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCC
ASLEDELVTVFTTQGDFLTDFTLNELVEKLPSEHFHRVHRRALLNLTHVARLEPLDTGGY
CCCCCCEEEEEECCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LARTLRGHAVEVSRQSARELRRMLGLRRGVEEEG
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRAGGVDVVLLDIHMPGLSGLDALALLPEGGPRVILCTAHAEHAVQAFEHGAVDYVLKPV
CCCCCEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEECCHHHHHHHHHCCCHHEEECCC
EPARLQKALERARARGPATSPTSTVSTPPKPPGSPVRGLGRLPIPTRQGIVLVDPEAISH
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCC
ASLEDELVTVFTTQGDFLTDFTLNELVEKLPSEHFHRVHRRALLNLTHVARLEPLDTGGY
CCCCCCEEEEEECCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LARTLRGHAVEVSRQSARELRRMLGLRRGVEEEG
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]