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The map label for this gene is sodB [H]

Identifier: 108563428

GI number: 108563428

Start: 1058541

End: 1059182

Strand: Direct

Name: sodB [H]

Synonym: HPAG1_1003

Alternate gene names: 108563428

Gene position: 1058541-1059182 (Clockwise)

Preceding gene: 108563426

Following gene: 108563429

Centisome position: 66.31

GC content: 38.94

Gene sequence:

>642_bases
ATGTTTACATTACGAGAGTTGCCTTTTGCTAAAGACAGCATGGGAGATTTTTTAAGCCCTGTGGCGTTTGATTTCCACCA
TGGGAAACACCATCAAACTTATGTGAATAATTTGAACAATCTCATCAAAGGCACAGATTTTGAGAAAAGTTCTTTGTTTG
ATATTTTGACAAAATCTAGCGGAGGCGTGTTCAATAACGCCGCTCAAATTTACAACCACGATTTTTATTGGGATTGCCTA
AGCCCAAAAGCGACTGCTTTAAGCGATGAGCTAAAAGGGGCTTTAGAAAAAGATTTTGGTTCATTGGAAAAATTTAAAGA
AGACTTCATTAAGAGCGCGACCACTCTGTTTGGCTCTGGATGGAATTGGGCAGCGTATAATTTAGACACTCAAAAAATTG
AAATCATTCAAACGAGCAATGCTCAAACCCCAGTTACGGATAAAAAAGTGCCGCTTTTAGTGGTGGATGTGTGGGAGCAT
GCTTATTATATTGACCACAAAAACGCGCGCCCTGTGTATTTGGAAAAATTCTATGGGCATATTAATTGGCATTTTGTCTC
TCAATGCTATGAGTGGGCGAAAAAAGAAGGCTTAGGCTCAGTGGATTACTACATCAATGAGTTGGTGCATAAAAAAGCTT
AA

Upstream 100 bases:

>100_bases
AATCTACAAAATTTGCATAAAGATCCATTTTTAAGAAAAGATTTACCAAAAAGTATTAAAAAATGATTACAATACGGCTA
TCTGATCACAAGGAGAAAAC

Downstream 100 bases:

>100_bases
GCGTTACGGGCTATTGTGGTTTAAAGGTTTTTAAACCACGCTTCTTTTTTGAATGAAAGACACTCTGTTTAATCAATCTC
TAAACAAACGCTTTTGCTTT

Product: iron-dependent superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA

Sequences:

>Translated_213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
>Mature_213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=36.2745098039216, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=36.2745098039216, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=31.7948717948718, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1787946, Length=188, Percent_Identity=53.7234042553192, Blast_Score=211, Evalue=3e-56,
Organism=Escherichia coli, GI1790342, Length=196, Percent_Identity=36.2244897959184, Blast_Score=134, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=34.3589743589744, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=34.010152284264, Blast_Score=110, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=29.8578199052133, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=36.6834170854271, Blast_Score=130, Evalue=8e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24518; Mature: 24518

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECHHEEEEECCCCCCCHHHHHHCC
INWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECHHEEEEECCCCCCCHHHHHHCC
INWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]