Click here to switch to the map view.

The map label for this gene is cmoA [H]

Identifier: 108563429

GI number: 108563429

Start: 1059235

End: 1059954

Strand: Direct

Name: cmoA [H]

Synonym: HPAG1_1004

Alternate gene names: 108563429

Gene position: 1059235-1059954 (Clockwise)

Preceding gene: 108563428

Following gene: 108563433

Centisome position: 66.35

GC content: 38.61

Gene sequence:

>720_bases
ATGAAAGACACTCTGTTTAATCAATCTCTAAACAAACGCTTTTGCTTTGATGAGAAAGTCGCCCATGTTTTTGACGACAT
GCTGGAGCGTTCCATCCCCTATTATTATGAAATGTTGGATTTGGGGGCGTATTTTATCGCTCAAAACTTAAAAGAAAATC
TCAATGCTAAGCCCTTGATTTATGATTTGGGCTGTTCTACCGGGAACTTTTTTATTGCGCTTAACCGGCAAATCCAACAA
GAAATTGAGCTTGTAGGGATTGACAATTCCATGCCCATGCTCAAAAAAGCGCAAGAAAAATTAAAAGATTTTAACAATGT
CCGTTTTGAATGCATGGATTTTTTAGAGGTTGAGTTTAAAGAAGCGAGCGCGTTTTCATTGCTTTTTGTGTTGCAATTTG
TCCGCCCCATGCAAAGAGAGGTGTTGCTCAAAAAGATTTATAACAGCCTTGCGTTGAATGGGGTTTTATTGGTGGGCGAA
AAGATCATGAGCGAAGATCGGATATTAGACAAGCAAATGATAGAGCTATACTACCTTTATAAACAAAATCAAGGCTACAG
CCACAATGAAATCGCTTTCAAAAGGGAAGCGTTAGAAAATGTGCTTGTGCCTTATAGTTTAAAAGAAAATATCGCGCTTT
TAGAAAGCGTGGGGTTTAAGCATGTGGAAGCGGTGTTTAAATGGGTGAATTTCACGCTGTTAGTCGCTAGAAAAACATGA

Upstream 100 bases:

>100_bases
GGCTCAGTGGATTACTACATCAATGAGTTGGTGCATAAAAAAGCTTAAGCGTTACGGGCTATTGTGGTTTAAAGGTTTTT
AAACCACGCTTCTTTTTTGA

Downstream 100 bases:

>100_bases
GTTTTTTGAAATAATATAGAAAACTTAAGTTTTTAAAAAATATCTATAGGGTCCATGTTCACGCTGCAAGGGATATTAGG
GGCGGTTTTTAAAAATGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKDTLFNQSLNKRFCFDEKVAHVFDDMLERSIPYYYEMLDLGAYFIAQNLKENLNAKPLIYDLGCSTGNFFIALNRQIQQ
EIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEAVFKWVNFTLLVARKT

Sequences:

>Translated_239_residues
MKDTLFNQSLNKRFCFDEKVAHVFDDMLERSIPYYYEMLDLGAYFIAQNLKENLNAKPLIYDLGCSTGNFFIALNRQIQQ
EIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEAVFKWVNFTLLVARKT
>Mature_239_residues
MKDTLFNQSLNKRFCFDEKVAHVFDDMLERSIPYYYEMLDLGAYFIAQNLKENLNAKPLIYDLGCSTGNFFIALNRQIQQ
EIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEAVFKWVNFTLLVARKT

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

Organism=Escherichia coli, GI1788177, Length=244, Percent_Identity=33.1967213114754, Blast_Score=134, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013217
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08242 Methyltransf_12 [H]

EC number: NA

Molecular weight: Translated: 28036; Mature: 28036

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTLFNQSLNKRFCFDEKVAHVFDDMLERSIPYYYEMLDLGAYFIAQNLKENLNAKPLI
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
YDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVEFK
EECCCCCCCEEEEECHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
EASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEAVFKWVNFTLLVARKT
HCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MKDTLFNQSLNKRFCFDEKVAHVFDDMLERSIPYYYEMLDLGAYFIAQNLKENLNAKPLI
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
YDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVEFK
EECCCCCCCEEEEECHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
EASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEAVFKWVNFTLLVARKT
HCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA