Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is b0663 [C]
Identifier: 108563302
GI number: 108563302
Start: 916338
End: 917003
Strand: Direct
Name: b0663 [C]
Synonym: HPAG1_0877
Alternate gene names: 108563302
Gene position: 916338-917003 (Clockwise)
Preceding gene: 108563300
Following gene: 108563306
Centisome position: 57.4
GC content: 38.89
Gene sequence:
>666_bases ATGGCTGGGGTGCAAGGATTCGAACCTCGGAATGCCAGGACCAAAACCTGGTGCCTTACCGCTTGGCGACACCCCAACAA AATTAAAAGAAGCATTATACAAAAGCTTTTTAAAAAAGTCAAGCTAAAACGCTATAATTCCATCATGGAAAATGGATTTG ACCCCCTCATTTATAAACGCTATTTGAAAAAGAAAGAAACCTTTTTGCTGTTTAAAAAAACCGCTCAAATGTCTGCGTTT AAAAATTTAAAGCTCCAGCTCAAGCGAAGAGAGGTGATTAAGCGCTATGTTTCTCAAGCTTTGGGGGATTTGAAGTCTGG GTTTAGATACGCTAAAGTAGAACACCAAATCCTAAAAATCTATTTCACGCACCCGAGTTTCTTGAAAGCCTTTAAGATAG AAGAAGCCTATTACACCAACCACCTGAAAGCCCATTTTAAAGAAACGCAAAAAACCCTAAAAGCTTTAAATTACCCTTTT GATTTTAAAATAATCCAAGCGAGCGTGAAAAAAAGGGCTTATCAAAAACCAGTTGTTAAAAAAGAAAAACCCCCTAAAAG CGTGAATGTCAATTGCGAAGGTTTGAGCGATTTCACTAAAAAGCAATTTTTAAAACTCAAACGCGCTTGTAACGATAATA CGCCGCGCACGCCCCCTCAGAGCTGA
Upstream 100 bases:
>100_bases ATTGGTTGCGGAGAATGGATTTGAACCACTGACCTTTGGGTTATGAGCCCAACGAGCTACCGGACTGCTCTACTCCGCGA TACACTAATAAAGGAAAAAA
Downstream 100 bases:
>100_bases CCATGCAACTGCCGATCGGGTTTTGCGGGGTGCAAATTGTAGCGAATAATGAGCAGTCTAGGGGCTTAGCGATGCCTTTT AAGATCTCCCCACACTTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAF KNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPF DFKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
Sequences:
>Translated_221_residues MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAF KNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPF DFKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS >Mature_220_residues AGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAFK NLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFD FKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26168; Mature: 26037
Theoretical pI: Translated: 10.99; Mature: 10.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKR CCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH YLKKKETFLLFKKTAQMSAFKNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFDFKIIQASVKKRAYQKPVVK EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC KEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKR CCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH YLKKKETFLLFKKTAQMSAFKNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFDFKIIQASVKKRAYQKPVVK EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC KEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA