Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is b0663 [C]

Identifier: 108563302

GI number: 108563302

Start: 916338

End: 917003

Strand: Direct

Name: b0663 [C]

Synonym: HPAG1_0877

Alternate gene names: 108563302

Gene position: 916338-917003 (Clockwise)

Preceding gene: 108563300

Following gene: 108563306

Centisome position: 57.4

GC content: 38.89

Gene sequence:

>666_bases
ATGGCTGGGGTGCAAGGATTCGAACCTCGGAATGCCAGGACCAAAACCTGGTGCCTTACCGCTTGGCGACACCCCAACAA
AATTAAAAGAAGCATTATACAAAAGCTTTTTAAAAAAGTCAAGCTAAAACGCTATAATTCCATCATGGAAAATGGATTTG
ACCCCCTCATTTATAAACGCTATTTGAAAAAGAAAGAAACCTTTTTGCTGTTTAAAAAAACCGCTCAAATGTCTGCGTTT
AAAAATTTAAAGCTCCAGCTCAAGCGAAGAGAGGTGATTAAGCGCTATGTTTCTCAAGCTTTGGGGGATTTGAAGTCTGG
GTTTAGATACGCTAAAGTAGAACACCAAATCCTAAAAATCTATTTCACGCACCCGAGTTTCTTGAAAGCCTTTAAGATAG
AAGAAGCCTATTACACCAACCACCTGAAAGCCCATTTTAAAGAAACGCAAAAAACCCTAAAAGCTTTAAATTACCCTTTT
GATTTTAAAATAATCCAAGCGAGCGTGAAAAAAAGGGCTTATCAAAAACCAGTTGTTAAAAAAGAAAAACCCCCTAAAAG
CGTGAATGTCAATTGCGAAGGTTTGAGCGATTTCACTAAAAAGCAATTTTTAAAACTCAAACGCGCTTGTAACGATAATA
CGCCGCGCACGCCCCCTCAGAGCTGA

Upstream 100 bases:

>100_bases
ATTGGTTGCGGAGAATGGATTTGAACCACTGACCTTTGGGTTATGAGCCCAACGAGCTACCGGACTGCTCTACTCCGCGA
TACACTAATAAAGGAAAAAA

Downstream 100 bases:

>100_bases
CCATGCAACTGCCGATCGGGTTTTGCGGGGTGCAAATTGTAGCGAATAATGAGCAGTCTAGGGGCTTAGCGATGCCTTTT
AAGATCTCCCCACACTTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAF
KNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPF
DFKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS

Sequences:

>Translated_221_residues
MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAF
KNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPF
DFKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
>Mature_220_residues
AGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKRYLKKKETFLLFKKTAQMSAFK
NLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKIYFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFD
FKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26168; Mature: 26037

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKR
CCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLKKKETFLLFKKTAQMSAFKNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFDFKIIQASVKKRAYQKPVVK
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
KEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AGVQGFEPRNARTKTWCLTAWRHPNKIKRSIIQKLFKKVKLKRYNSIMENGFDPLIYKR
CCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLKKKETFLLFKKTAQMSAFKNLKLQLKRREVIKRYVSQALGDLKSGFRYAKVEHQILKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YFTHPSFLKAFKIEEAYYTNHLKAHFKETQKTLKALNYPFDFKIIQASVKKRAYQKPVVK
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
KEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA